Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
SMARCA1P28370 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.22
SMARCA1P28370 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SMARCA1P28370 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SMARCA1P28370 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC16.39■□□□□ 0.21
SMARCA1P28370 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
SMARCA1P28370 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
SMARCA1P28370 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SMARCA1P28370 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
SMARCA1P28370 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SMARCA1P28370 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC16.39■□□□□ 0.21
SMARCA1P28370 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SMARCA1P28370 AL807761.2-201ENST00000422849 729 ntBASIC16.39■□□□□ 0.21
SMARCA1P28370 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC16.39■□□□□ 0.21
SMARCA1P28370 AK2P2-201ENST00000439142 405 ntBASIC16.39■□□□□ 0.21
SMARCA1P28370 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
SMARCA1P28370 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC16.39■□□□□ 0.21
SMARCA1P28370 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC16.39■□□□□ 0.21
SMARCA1P28370 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC16.39■□□□□ 0.21
SMARCA1P28370 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC16.39■□□□□ 0.21
SMARCA1P28370 RN7SL665P-201ENST00000578793 300 ntBASIC16.39■□□□□ 0.21
SMARCA1P28370 AL021707.6-201ENST00000609212 491 ntBASIC16.39■□□□□ 0.21
SMARCA1P28370 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SMARCA1P28370 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC16.39■□□□□ 0.21
SMARCA1P28370 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SMARCA1P28370 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC16.39■□□□□ 0.21
SMARCA1P28370 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SMARCA1P28370 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SMARCA1P28370 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SMARCA1P28370 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SMARCA1P28370 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SMARCA1P28370 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SMARCA1P28370 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SMARCA1P28370 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC16.38■□□□□ 0.21
SMARCA1P28370 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SMARCA1P28370 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
SMARCA1P28370 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SMARCA1P28370 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC16.38■□□□□ 0.21
SMARCA1P28370 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC16.38■□□□□ 0.21
SMARCA1P28370 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SMARCA1P28370 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
SMARCA1P28370 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC16.38■□□□□ 0.21
SMARCA1P28370 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SMARCA1P28370 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SMARCA1P28370 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SMARCA1P28370 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SMARCA1P28370 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SMARCA1P28370 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SMARCA1P28370 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
SMARCA1P28370 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
SMARCA1P28370 AL583805.1-201ENST00000391389 531 ntBASIC16.38■□□□□ 0.21
SMARCA1P28370 AL627231.1-201ENST00000394467 1125 ntBASIC16.38■□□□□ 0.21
SMARCA1P28370 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SMARCA1P28370 HLA-DQB2-229ENST00000411527 1059 ntBASIC16.38■□□□□ 0.21
SMARCA1P28370 AL592076.1-201ENST00000424448 303 ntBASIC16.38■□□□□ 0.21
SMARCA1P28370 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC16.38■□□□□ 0.21
SMARCA1P28370 MAGEA5-201ENST00000446757 942 ntBASIC16.38■□□□□ 0.21
SMARCA1P28370 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC16.38■□□□□ 0.21
SMARCA1P28370 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC16.38■□□□□ 0.21
SMARCA1P28370 TMEM198B-204ENST00000484016 896 ntBASIC16.38■□□□□ 0.21
SMARCA1P28370 AC130709.1-201ENST00000484779 1212 ntBASIC16.38■□□□□ 0.21
SMARCA1P28370 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SMARCA1P28370 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SMARCA1P28370 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SMARCA1P28370 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SMARCA1P28370 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC16.38■□□□□ 0.21
SMARCA1P28370 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC16.38■□□□□ 0.21
SMARCA1P28370 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC16.38■□□□□ 0.21
SMARCA1P28370 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC16.38■□□□□ 0.21
SMARCA1P28370 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC16.38■□□□□ 0.21
SMARCA1P28370 AL133499.1-201ENST00000596207 608 ntBASIC16.38■□□□□ 0.21
SMARCA1P28370 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SMARCA1P28370 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SMARCA1P28370 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SMARCA1P28370 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SMARCA1P28370 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SMARCA1P28370 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SMARCA1P28370 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SMARCA1P28370 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
SMARCA1P28370 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC16.38■□□□□ 0.21
SMARCA1P28370 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SMARCA1P28370 AL139158.3-201ENST00000641212 1562 ntBASIC16.38■□□□□ 0.21
SMARCA1P28370 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SMARCA1P28370 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SMARCA1P28370 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SMARCA1P28370 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SMARCA1P28370 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SMARCA1P28370 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SMARCA1P28370 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
SMARCA1P28370 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SMARCA1P28370 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SMARCA1P28370 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
SMARCA1P28370 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.37■□□□□ 0.21
SMARCA1P28370 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SMARCA1P28370 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SMARCA1P28370 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SMARCA1P28370 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
SMARCA1P28370 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
SMARCA1P28370 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC16.37■□□□□ 0.21
SMARCA1P28370 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms