Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SYNE4Q8N205 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SYNE4Q8N205 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
SYNE4Q8N205 AC090505.1-201ENST00000430515 1834 ntBASIC17.72■□□□□ 0.43
SYNE4Q8N205 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SYNE4Q8N205 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SYNE4Q8N205 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
SYNE4Q8N205 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SYNE4Q8N205 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SYNE4Q8N205 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
SYNE4Q8N205 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SYNE4Q8N205 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SYNE4Q8N205 AC019109.1-201ENST00000401725 1874 ntBASIC17.71■□□□□ 0.43
SYNE4Q8N205 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SYNE4Q8N205 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SYNE4Q8N205 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
SYNE4Q8N205 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
SYNE4Q8N205 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SYNE4Q8N205 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SYNE4Q8N205 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC17.71■□□□□ 0.43
SYNE4Q8N205 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SYNE4Q8N205 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SYNE4Q8N205 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SYNE4Q8N205 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC17.71■□□□□ 0.43
SYNE4Q8N205 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SYNE4Q8N205 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SYNE4Q8N205 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
SYNE4Q8N205 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SYNE4Q8N205 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC17.71■□□□□ 0.43
SYNE4Q8N205 TPT1P11-201ENST00000458482 498 ntBASIC17.71■□□□□ 0.43
SYNE4Q8N205 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC17.71■□□□□ 0.43
SYNE4Q8N205 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC17.71■□□□□ 0.43
SYNE4Q8N205 FAM86B3P-203ENST00000523992 854 ntBASIC17.71■□□□□ 0.43
SYNE4Q8N205 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC17.71■□□□□ 0.43
SYNE4Q8N205 KRT8P2-201ENST00000556193 944 ntBASIC17.71■□□□□ 0.43
SYNE4Q8N205 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC17.71■□□□□ 0.43
SYNE4Q8N205 NAMA-206ENST00000605377 509 ntTSL 5 BASIC17.71■□□□□ 0.43
SYNE4Q8N205 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC17.71■□□□□ 0.43
SYNE4Q8N205 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
SYNE4Q8N205 USP39-220ENST00000613444 2161 ntTSL 2 BASIC17.71■□□□□ 0.43
SYNE4Q8N205 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SYNE4Q8N205 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SYNE4Q8N205 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
SYNE4Q8N205 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC17.71■□□□□ 0.43
SYNE4Q8N205 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC17.71■□□□□ 0.43
SYNE4Q8N205 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SYNE4Q8N205 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
SYNE4Q8N205 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
SYNE4Q8N205 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
SYNE4Q8N205 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SYNE4Q8N205 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SYNE4Q8N205 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
SYNE4Q8N205 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC17.71■□□□□ 0.42
SYNE4Q8N205 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.42
SYNE4Q8N205 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE4Q8N205 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
SYNE4Q8N205 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE4Q8N205 KRT8P43-201ENST00000406052 1458 ntBASIC17.7■□□□□ 0.42
SYNE4Q8N205 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE4Q8N205 FAM90A21P-201ENST00000510875 1396 ntBASIC17.7■□□□□ 0.42
SYNE4Q8N205 FAM90A15P-201ENST00000514465 1395 ntBASIC17.7■□□□□ 0.42
SYNE4Q8N205 FAM90A6P-201ENST00000515148 1394 ntBASIC17.7■□□□□ 0.42
SYNE4Q8N205 FAM90A16P-201ENST00000526662 1395 ntBASIC17.7■□□□□ 0.42
SYNE4Q8N205 FAM90A9P-201ENST00000527940 1395 ntBASIC17.7■□□□□ 0.42
SYNE4Q8N205 FAM90A5P-201ENST00000528738 1395 ntBASIC17.7■□□□□ 0.42
SYNE4Q8N205 FAM90A14P-201ENST00000530386 1395 ntBASIC17.7■□□□□ 0.42
SYNE4Q8N205 FAM90A13P-201ENST00000534703 1395 ntBASIC17.7■□□□□ 0.42
SYNE4Q8N205 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC17.7■□□□□ 0.42
SYNE4Q8N205 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE4Q8N205 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE4Q8N205 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
SYNE4Q8N205 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE4Q8N205 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE4Q8N205 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
SYNE4Q8N205 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE4Q8N205 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE4Q8N205 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
SYNE4Q8N205 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE4Q8N205 STK24P1-201ENST00000455035 1291 ntBASIC17.7■□□□□ 0.42
SYNE4Q8N205 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC17.7■□□□□ 0.42
SYNE4Q8N205 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC17.7■□□□□ 0.42
SYNE4Q8N205 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE4Q8N205 PGAM1P12-201ENST00000505622 748 ntBASIC17.7■□□□□ 0.42
SYNE4Q8N205 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC17.7■□□□□ 0.42
SYNE4Q8N205 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE4Q8N205 AC226150.1-201ENST00000544259 466 ntBASIC17.7■□□□□ 0.42
SYNE4Q8N205 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC17.7■□□□□ 0.42
SYNE4Q8N205 AL512310.5-201ENST00000551999 515 ntBASIC17.7■□□□□ 0.42
SYNE4Q8N205 CMC2-204ENST00000562713 573 ntTSL 3 BASIC17.7■□□□□ 0.42
SYNE4Q8N205 CMC2-209ENST00000565108 399 ntTSL 2 BASIC17.7■□□□□ 0.42
SYNE4Q8N205 AC055811.3-201ENST00000584952 686 ntBASIC17.7■□□□□ 0.42
SYNE4Q8N205 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.7■□□□□ 0.42
SYNE4Q8N205 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE4Q8N205 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE4Q8N205 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE4Q8N205 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE4Q8N205 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC17.7■□□□□ 0.42
SYNE4Q8N205 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE4Q8N205 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE4Q8N205 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms