Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC16.8■□□□□ 0.28
RHBDL3P58872 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC16.8■□□□□ 0.28
RHBDL3P58872 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
RHBDL3P58872 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RHBDL3P58872 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RHBDL3P58872 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RHBDL3P58872 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC16.8■□□□□ 0.28
RHBDL3P58872 AC068760.1-201ENST00000493579 1953 ntBASIC16.8■□□□□ 0.28
RHBDL3P58872 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RHBDL3P58872 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RHBDL3P58872 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
RHBDL3P58872 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RHBDL3P58872 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RHBDL3P58872 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC16.79■□□□□ 0.28
RHBDL3P58872 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
RHBDL3P58872 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.79■□□□□ 0.28
RHBDL3P58872 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC16.79■□□□□ 0.28
RHBDL3P58872 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC16.79■□□□□ 0.28
RHBDL3P58872 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 STK16-203ENST00000409516 895 ntTSL 2 BASIC16.79■□□□□ 0.28
RHBDL3P58872 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC16.79■□□□□ 0.28
RHBDL3P58872 KRT18P66-201ENST00000452970 1269 ntBASIC16.79■□□□□ 0.28
RHBDL3P58872 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC16.79■□□□□ 0.28
RHBDL3P58872 AL132994.1-201ENST00000554098 400 ntBASIC16.79■□□□□ 0.28
RHBDL3P58872 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 AL009176.1-201ENST00000607876 650 ntBASIC16.79■□□□□ 0.28
RHBDL3P58872 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
RHBDL3P58872 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC16.79■□□□□ 0.28
RHBDL3P58872 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
RHBDL3P58872 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 AC007686.3-201ENST00000619017 3487 ntBASIC16.79■□□□□ 0.28
RHBDL3P58872 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
RHBDL3P58872 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC16.79■□□□□ 0.28
RHBDL3P58872 GOLGA8UP-201ENST00000527159 1755 ntBASIC16.79■□□□□ 0.28
RHBDL3P58872 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RHBDL3P58872 CICP16-201ENST00000502609 2813 ntBASIC16.78■□□□□ 0.28
RHBDL3P58872 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RHBDL3P58872 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
RHBDL3P58872 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RHBDL3P58872 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC16.78■□□□□ 0.28
RHBDL3P58872 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
RHBDL3P58872 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RHBDL3P58872 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RHBDL3P58872 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RHBDL3P58872 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
RHBDL3P58872 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RHBDL3P58872 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RHBDL3P58872 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
RHBDL3P58872 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC16.78■□□□□ 0.28
RHBDL3P58872 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
RHBDL3P58872 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RHBDL3P58872 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
RHBDL3P58872 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RHBDL3P58872 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
RHBDL3P58872 NME4-203ENST00000397722 1232 ntTSL 2 BASIC16.78■□□□□ 0.28
RHBDL3P58872 AC108734.2-201ENST00000420887 1069 ntBASIC16.78■□□□□ 0.28
RHBDL3P58872 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC16.78■□□□□ 0.28
RHBDL3P58872 RN7SL23P-201ENST00000484055 275 ntBASIC16.78■□□□□ 0.28
RHBDL3P58872 RN7SL375P-201ENST00000492442 298 ntBASIC16.78■□□□□ 0.28
RHBDL3P58872 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC16.78■□□□□ 0.28
RHBDL3P58872 PRSS3P1-201ENST00000503996 742 ntBASIC16.78■□□□□ 0.28
RHBDL3P58872 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC16.78■□□□□ 0.28
RHBDL3P58872 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC16.78■□□□□ 0.28
RHBDL3P58872 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
RHBDL3P58872 AL118522.1-201ENST00000611368 560 ntBASIC16.78■□□□□ 0.28
RHBDL3P58872 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC16.78■□□□□ 0.28
RHBDL3P58872 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC16.78■□□□□ 0.28
RHBDL3P58872 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC16.78■□□□□ 0.28
RHBDL3P58872 AC021305.1-201ENST00000520656 1514 ntBASIC16.78■□□□□ 0.28
RHBDL3P58872 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RHBDL3P58872 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC16.78■□□□□ 0.28
RHBDL3P58872 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
RHBDL3P58872 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
RHBDL3P58872 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
RHBDL3P58872 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC16.78■□□□□ 0.28
RHBDL3P58872 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RHBDL3P58872 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RHBDL3P58872 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RHBDL3P58872 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC16.78■□□□□ 0.28
RHBDL3P58872 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms