Protein–RNA interactions for Protein: P56749

CLDN12, Claudin-12, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN12P56749 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
CLDN12P56749 AC118758.2-201ENST00000614242 2813 ntBASIC12.62□□□□□ -0.39
CLDN12P56749 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC12.62□□□□□ -0.39
CLDN12P56749 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 BDH1-203ENST00000392379 3546 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
CLDN12P56749 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
CLDN12P56749 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
CLDN12P56749 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
CLDN12P56749 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC12.62□□□□□ -0.39
CLDN12P56749 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC12.62□□□□□ -0.39
CLDN12P56749 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
CLDN12P56749 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC12.62□□□□□ -0.39
CLDN12P56749 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC12.62□□□□□ -0.39
CLDN12P56749 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC12.62□□□□□ -0.39
CLDN12P56749 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC12.62□□□□□ -0.39
CLDN12P56749 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC12.62□□□□□ -0.39
CLDN12P56749 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC12.62□□□□□ -0.39
CLDN12P56749 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC12.62□□□□□ -0.39
CLDN12P56749 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC12.62□□□□□ -0.39
CLDN12P56749 VPS18-202ENST00000558474 873 ntTSL 3 BASIC12.62□□□□□ -0.39
CLDN12P56749 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC12.62□□□□□ -0.39
CLDN12P56749 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC12.62□□□□□ -0.39
CLDN12P56749 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC12.62□□□□□ -0.39
CLDN12P56749 AL603764.1-201ENST00000636452 321 ntBASIC12.62□□□□□ -0.39
CLDN12P56749 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
CLDN12P56749 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 TNRC18P1-201ENST00000502875 3650 ntBASIC12.62□□□□□ -0.39
CLDN12P56749 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 C19orf12-209ENST00000623113 4242 ntTSL 2 BASIC12.62□□□□□ -0.39
CLDN12P56749 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
CLDN12P56749 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
CLDN12P56749 RAB3D-201ENST00000222120 4273 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC12.62□□□□□ -0.39
CLDN12P56749 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLDN12P56749 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC12.62□□□□□ -0.39
CLDN12P56749 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLDN12P56749 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC12.61□□□□□ -0.39
CLDN12P56749 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC12.61□□□□□ -0.39
CLDN12P56749 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC12.61□□□□□ -0.39
CLDN12P56749 AP002761.4-201ENST00000565433 3361 ntBASIC12.61□□□□□ -0.39
CLDN12P56749 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLDN12P56749 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLDN12P56749 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLDN12P56749 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC12.61□□□□□ -0.39
CLDN12P56749 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLDN12P56749 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
CLDN12P56749 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLDN12P56749 SEZ6L-201ENST00000248933 3248 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLDN12P56749 SEZ6L-210ENST00000629590 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLDN12P56749 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
CLDN12P56749 FAM122B-203ENST00000370790 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLDN12P56749 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
CLDN12P56749 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLDN12P56749 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLDN12P56749 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLDN12P56749 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
CLDN12P56749 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
CLDN12P56749 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
CLDN12P56749 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CLDN12P56749 B9D1-203ENST00000395615 805 ntTSL 3 BASIC12.61□□□□□ -0.39
CLDN12P56749 MIR943-201ENST00000401286 94 ntBASIC12.61□□□□□ -0.39
CLDN12P56749 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC12.61□□□□□ -0.39
CLDN12P56749 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC12.61□□□□□ -0.39
CLDN12P56749 AP000347.1-202ENST00000435868 847 ntBASIC12.61□□□□□ -0.39
CLDN12P56749 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC12.61□□□□□ -0.39
CLDN12P56749 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC12.61□□□□□ -0.39
CLDN12P56749 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC12.61□□□□□ -0.39
CLDN12P56749 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC12.61□□□□□ -0.39
CLDN12P56749 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC12.61□□□□□ -0.39
CLDN12P56749 MIR8072-201ENST00000614241 80 ntBASIC12.61□□□□□ -0.39
CLDN12P56749 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC12.61□□□□□ -0.39
CLDN12P56749 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC12.61□□□□□ -0.39
CLDN12P56749 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC12.61□□□□□ -0.39
CLDN12P56749 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC12.61□□□□□ -0.39
CLDN12P56749 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
CLDN12P56749 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC12.61□□□□□ -0.39
CLDN12P56749 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC12.61□□□□□ -0.39
CLDN12P56749 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC12.61□□□□□ -0.39
CLDN12P56749 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLDN12P56749 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
CLDN12P56749 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms