Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC4P56524 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC15.11■□□□□ 0.01
HDAC4P56524 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC15.11■□□□□ 0.01
HDAC4P56524 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC4P56524 SLC9A3P3-201ENST00000457608 2229 ntBASIC15.11■□□□□ 0.01
HDAC4P56524 C1R-201ENST00000535233 2211 ntTSL 2 BASIC15.11■□□□□ 0.01
HDAC4P56524 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC15.11■□□□□ 0.01
HDAC4P56524 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC15.1■□□□□ 0.01
HDAC4P56524 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC15.1■□□□□ 0.01
HDAC4P56524 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC15.1■□□□□ 0.01
HDAC4P56524 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC15.1■□□□□ 0.01
HDAC4P56524 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
HDAC4P56524 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
HDAC4P56524 RPF1-202ENST00000370656 724 ntTSL 2 BASIC15.1■□□□□ 0.01
HDAC4P56524 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
HDAC4P56524 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC15.1■□□□□ 0.01
HDAC4P56524 AC021723.1-201ENST00000486306 515 ntBASIC15.1■□□□□ 0.01
HDAC4P56524 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 SCARNA21-201ENST00000517026 139 ntBASIC15.1■□□□□ 0.01
HDAC4P56524 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC15.1■□□□□ 0.01
HDAC4P56524 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC15.1■□□□□ 0.01
HDAC4P56524 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC15.1■□□□□ 0.01
HDAC4P56524 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 BNIP3P13-201ENST00000599968 566 ntBASIC15.1■□□□□ 0.01
HDAC4P56524 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC15.1■□□□□ 0.01
HDAC4P56524 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 PTENP1-202ENST00000532280 3996 ntBASIC15.1■□□□□ 0.01
HDAC4P56524 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
HDAC4P56524 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
HDAC4P56524 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
HDAC4P56524 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC15.1■□□□□ 0.01
HDAC4P56524 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC15.1■□□□□ 0.01
HDAC4P56524 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC15.1■□□□□ 0.01
HDAC4P56524 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC4P56524 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC15.1■□□□□ 0.01
HDAC4P56524 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
HDAC4P56524 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC15.09■□□□□ 0.01
HDAC4P56524 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC4P56524 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC4P56524 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC4P56524 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC4P56524 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
HDAC4P56524 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC4P56524 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC4P56524 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC4P56524 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC4P56524 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC4P56524 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
HDAC4P56524 MIR1908-201ENST00000410394 80 ntBASIC15.09■□□□□ 0.01
HDAC4P56524 KRT18P36-201ENST00000411618 1276 ntBASIC15.09■□□□□ 0.01
HDAC4P56524 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC15.09■□□□□ 0.01
HDAC4P56524 POM121L10P-201ENST00000436994 1285 ntBASIC15.09■□□□□ 0.01
HDAC4P56524 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC15.09■□□□□ 0.01
HDAC4P56524 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC4P56524 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC15.09■□□□□ 0.01
HDAC4P56524 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC15.09■□□□□ 0.01
HDAC4P56524 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC15.09■□□□□ 0.01
HDAC4P56524 DERL2-202ENST00000570848 657 ntTSL 5 BASIC15.09■□□□□ 0.01
HDAC4P56524 AP000346.4-201ENST00000614827 381 ntBASIC15.09■□□□□ 0.01
HDAC4P56524 AL023803.2-201ENST00000620080 638 ntBASIC15.09■□□□□ 0.01
HDAC4P56524 AC133540.1-201ENST00000620845 1019 ntBASIC15.09■□□□□ 0.01
HDAC4P56524 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC15.09■□□□□ 0.01
HDAC4P56524 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
HDAC4P56524 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
HDAC4P56524 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC4P56524 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC4P56524 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
HDAC4P56524 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
HDAC4P56524 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC15.09■□□□□ 0.01
HDAC4P56524 FAM90A7P-201ENST00000382628 1395 ntBASIC15.09■□□□□ 0.01
HDAC4P56524 FAM90A23P-201ENST00000400136 1395 ntBASIC15.09■□□□□ 0.01
HDAC4P56524 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC4P56524 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC4P56524 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC4P56524 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
HDAC4P56524 AC090643.2-201ENST00000623442 2029 ntBASIC15.09■□□□□ 0.01
HDAC4P56524 AC004899.1-201ENST00000424687 1714 ntBASIC15.09■□□□□ 0.01
HDAC4P56524 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC4P56524 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms