Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
COL4A4P53420 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
COL4A4P53420 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL4A4P53420 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL4A4P53420 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC14.94□□□□□ -0.02
COL4A4P53420 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC14.94□□□□□ -0.02
COL4A4P53420 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL4A4P53420 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL4A4P53420 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC14.94□□□□□ -0.02
COL4A4P53420 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC14.94□□□□□ -0.02
COL4A4P53420 LINC00115-201ENST00000473798 1317 ntBASIC14.94□□□□□ -0.02
COL4A4P53420 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
COL4A4P53420 RPL14-203ENST00000416518 812 ntTSL 3 BASIC14.94□□□□□ -0.02
COL4A4P53420 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC14.94□□□□□ -0.02
COL4A4P53420 CDK4P1-201ENST00000454213 828 ntBASIC14.94□□□□□ -0.02
COL4A4P53420 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC14.94□□□□□ -0.02
COL4A4P53420 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC14.94□□□□□ -0.02
COL4A4P53420 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL4A4P53420 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.94□□□□□ -0.02
COL4A4P53420 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
COL4A4P53420 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL4A4P53420 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL4A4P53420 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
COL4A4P53420 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC14.94□□□□□ -0.02
COL4A4P53420 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL4A4P53420 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL4A4P53420 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL4A4P53420 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC14.94□□□□□ -0.02
COL4A4P53420 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL4A4P53420 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL4A4P53420 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
COL4A4P53420 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL4A4P53420 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL4A4P53420 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
COL4A4P53420 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL4A4P53420 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL4A4P53420 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL4A4P53420 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL4A4P53420 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC14.94□□□□□ -0.02
COL4A4P53420 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.94□□□□□ -0.02
COL4A4P53420 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
COL4A4P53420 HLA-DMA-202ENST00000395303 1007 ntBASIC14.93□□□□□ -0.02
COL4A4P53420 OLA1P2-201ENST00000395519 1264 ntBASIC14.93□□□□□ -0.02
COL4A4P53420 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
COL4A4P53420 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC14.93□□□□□ -0.02
COL4A4P53420 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC14.93□□□□□ -0.02
COL4A4P53420 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC14.93□□□□□ -0.02
COL4A4P53420 AP003351.1-201ENST00000522743 668 ntTSL 3 BASIC14.93□□□□□ -0.02
COL4A4P53420 BMF-206ENST00000558774 671 ntTSL 3 BASIC14.93□□□□□ -0.02
COL4A4P53420 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC14.93□□□□□ -0.02
COL4A4P53420 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 AL009176.1-201ENST00000607876 650 ntBASIC14.93□□□□□ -0.02
COL4A4P53420 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
COL4A4P53420 AC008536.3-201ENST00000623282 1599 ntBASIC14.93□□□□□ -0.02
COL4A4P53420 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 ANKRD26P3-201ENST00000454044 2748 ntBASIC14.93□□□□□ -0.02
COL4A4P53420 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.93□□□□□ -0.02
COL4A4P53420 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
COL4A4P53420 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC14.93□□□□□ -0.02
COL4A4P53420 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.93□□□□□ -0.02
COL4A4P53420 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 RNA5SP491-201ENST00000362936 118 ntBASIC14.93□□□□□ -0.02
COL4A4P53420 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC14.93□□□□□ -0.02
COL4A4P53420 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
COL4A4P53420 VDAC1P11-201ENST00000458323 852 ntBASIC14.93□□□□□ -0.02
COL4A4P53420 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC14.93□□□□□ -0.02
COL4A4P53420 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 BATF-202ENST00000555504 361 ntTSL 2 BASIC14.93□□□□□ -0.02
COL4A4P53420 HNRNPA1P5-201ENST00000558213 966 ntBASIC14.93□□□□□ -0.02
COL4A4P53420 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
COL4A4P53420 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
COL4A4P53420 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC14.93□□□□□ -0.02
COL4A4P53420 NEK4P3-201ENST00000604859 544 ntBASIC14.93□□□□□ -0.02
COL4A4P53420 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC14.93□□□□□ -0.02
COL4A4P53420 AL807740.1-201ENST00000636971 567 ntTSL 4 BASIC14.93□□□□□ -0.02
COL4A4P53420 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
COL4A4P53420 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL4A4P53420 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms