Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 MTHFR-210ENST00000641407 2387 ntBASIC13.29□□□□□ -0.28
RFC3P40938 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
RFC3P40938 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RFC3P40938 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
RFC3P40938 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RFC3P40938 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RFC3P40938 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
RFC3P40938 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RFC3P40938 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
RFC3P40938 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RFC3P40938 PDIA3P2-201ENST00000428073 158 ntBASIC13.29□□□□□ -0.28
RFC3P40938 PTPA-215ENST00000432124 567 ntTSL 4 BASIC13.29□□□□□ -0.28
RFC3P40938 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC13.29□□□□□ -0.28
RFC3P40938 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RFC3P40938 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC13.29□□□□□ -0.28
RFC3P40938 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC13.29□□□□□ -0.28
RFC3P40938 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC13.29□□□□□ -0.28
RFC3P40938 CENPX-208ENST00000584347 799 ntTSL 2 BASIC13.29□□□□□ -0.28
RFC3P40938 IRF3-215ENST00000596822 823 ntTSL 3 BASIC13.29□□□□□ -0.28
RFC3P40938 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RFC3P40938 AP000346.4-201ENST00000614827 381 ntBASIC13.29□□□□□ -0.28
RFC3P40938 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC13.29□□□□□ -0.28
RFC3P40938 AC079336.7-201ENST00000623428 1078 ntBASIC13.29□□□□□ -0.28
RFC3P40938 AC018629.1-201ENST00000623381 1736 ntBASIC13.29□□□□□ -0.28
RFC3P40938 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RFC3P40938 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RFC3P40938 C1R-201ENST00000535233 2211 ntTSL 2 BASIC13.29□□□□□ -0.28
RFC3P40938 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RFC3P40938 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC13.29□□□□□ -0.28
RFC3P40938 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC13.29□□□□□ -0.28
RFC3P40938 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC13.29□□□□□ -0.28
RFC3P40938 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
RFC3P40938 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.29□□□□□ -0.28
RFC3P40938 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RFC3P40938 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.28□□□□□ -0.28
RFC3P40938 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC13.28□□□□□ -0.28
RFC3P40938 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 AC139712.1-201ENST00000378256 1875 ntBASIC13.28□□□□□ -0.28
RFC3P40938 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
RFC3P40938 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC13.28□□□□□ -0.28
RFC3P40938 AC092506.1-202ENST00000401022 528 ntBASIC13.28□□□□□ -0.28
RFC3P40938 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC13.28□□□□□ -0.28
RFC3P40938 HINT2P1-201ENST00000419438 481 ntBASIC13.28□□□□□ -0.28
RFC3P40938 EEF1DP6-201ENST00000449232 372 ntBASIC13.28□□□□□ -0.28
RFC3P40938 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC13.28□□□□□ -0.28
RFC3P40938 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC13.28□□□□□ -0.28
RFC3P40938 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC13.28□□□□□ -0.28
RFC3P40938 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
RFC3P40938 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 PAM16-211ENST00000575848 518 ntTSL 3 BASIC13.28□□□□□ -0.28
RFC3P40938 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
RFC3P40938 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC13.28□□□□□ -0.28
RFC3P40938 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
RFC3P40938 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC13.28□□□□□ -0.28
RFC3P40938 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC13.28□□□□□ -0.28
RFC3P40938 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC13.28□□□□□ -0.28
RFC3P40938 AC007718.1-201ENST00000621078 280 ntBASIC13.28□□□□□ -0.28
RFC3P40938 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC13.28□□□□□ -0.28
RFC3P40938 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC13.28□□□□□ -0.28
RFC3P40938 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC13.28□□□□□ -0.28
RFC3P40938 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RFC3P40938 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
RFC3P40938 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
RFC3P40938 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
RFC3P40938 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
RFC3P40938 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC13.27□□□□□ -0.28
RFC3P40938 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
RFC3P40938 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
RFC3P40938 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.28
RFC3P40938 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
RFC3P40938 MX1-218ENST00000619682 1980 ntTSL 5 BASIC13.27□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms