Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 AL353637.1-201ENST00000451571 732 ntBASIC14.54□□□□□ -0.08
DKK3Q9UBP4 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 POU5F1P2-201ENST00000521750 823 ntBASIC14.54□□□□□ -0.08
DKK3Q9UBP4 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 AC140658.4-201ENST00000561990 352 ntBASIC14.54□□□□□ -0.08
DKK3Q9UBP4 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 RETN-203ENST00000629642 400 ntTSL 5 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
DKK3Q9UBP4 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 WARS-203ENST00000358655 2466 ntTSL 2 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 AC140479.7-201ENST00000636301 2332 ntBASIC14.53□□□□□ -0.08
DKK3Q9UBP4 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 RN7SL832P-201ENST00000607781 1756 ntBASIC14.53□□□□□ -0.08
DKK3Q9UBP4 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 JTB-202ENST00000356648 1040 ntTSL 2 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 AC012618.1-201ENST00000461223 412 ntBASIC14.53□□□□□ -0.08
DKK3Q9UBP4 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 CHMP4BP1-201ENST00000556017 588 ntBASIC14.53□□□□□ -0.08
DKK3Q9UBP4 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
DKK3Q9UBP4 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms