Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
CISHQ9NSE2 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
CISHQ9NSE2 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 KCP-203ENST00000610776 5108 ntTSL 5 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 FUK-202ENST00000378912 3925 ntTSL 2 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 AL157996.1-201ENST00000624684 2299 ntBASIC15.36■□□□□ 0.05
CISHQ9NSE2 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 RN7SKP214-201ENST00000364208 315 ntBASIC15.36■□□□□ 0.05
CISHQ9NSE2 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 GPAA1P2-201ENST00000417923 928 ntBASIC15.36■□□□□ 0.05
CISHQ9NSE2 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 ARL16-210ENST00000574938 751 ntTSL 2 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 AC020914.3-201ENST00000594712 304 ntBASIC15.36■□□□□ 0.05
CISHQ9NSE2 AL645939.5-201ENST00000606834 243 ntBASIC15.36■□□□□ 0.05
CISHQ9NSE2 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 KRT8P24-201ENST00000560290 1559 ntBASIC15.36■□□□□ 0.05
CISHQ9NSE2 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CISHQ9NSE2 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
CISHQ9NSE2 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC15.35■□□□□ 0.05
CISHQ9NSE2 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CISHQ9NSE2 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CISHQ9NSE2 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC15.35■□□□□ 0.05
CISHQ9NSE2 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC15.35■□□□□ 0.05
CISHQ9NSE2 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CISHQ9NSE2 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CISHQ9NSE2 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CISHQ9NSE2 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC15.35■□□□□ 0.05
CISHQ9NSE2 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CISHQ9NSE2 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
CISHQ9NSE2 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC15.35■□□□□ 0.05
CISHQ9NSE2 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CISHQ9NSE2 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CISHQ9NSE2 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
CISHQ9NSE2 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CISHQ9NSE2 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC15.35■□□□□ 0.05
CISHQ9NSE2 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CISHQ9NSE2 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC15.35■□□□□ 0.05
CISHQ9NSE2 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CISHQ9NSE2 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CISHQ9NSE2 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC15.35■□□□□ 0.05
CISHQ9NSE2 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CISHQ9NSE2 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC15.35■□□□□ 0.05
CISHQ9NSE2 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CISHQ9NSE2 MIR4525-201ENST00000580000 75 ntBASIC15.35■□□□□ 0.05
CISHQ9NSE2 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC15.35■□□□□ 0.05
CISHQ9NSE2 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
CISHQ9NSE2 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CISHQ9NSE2 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
CISHQ9NSE2 AC011474.4-201ENST00000623523 2076 ntBASIC15.35■□□□□ 0.05
CISHQ9NSE2 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CISHQ9NSE2 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC15.35■□□□□ 0.05
CISHQ9NSE2 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CISHQ9NSE2 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CISHQ9NSE2 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC15.35■□□□□ 0.05
CISHQ9NSE2 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CISHQ9NSE2 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CISHQ9NSE2 AC020907.1-201ENST00000616460 1350 ntBASIC15.35■□□□□ 0.05
CISHQ9NSE2 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
CISHQ9NSE2 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
CISHQ9NSE2 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC15.35■□□□□ 0.05
CISHQ9NSE2 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms