Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC9P31274 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC9P31274 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
HOXC9P31274 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
HOXC9P31274 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC18.8■□□□□ 0.6
HOXC9P31274 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC9P31274 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC18.79■□□□□ 0.6
HOXC9P31274 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC9P31274 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC9P31274 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC18.79■□□□□ 0.6
HOXC9P31274 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC18.79■□□□□ 0.6
HOXC9P31274 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC9P31274 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
HOXC9P31274 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC9P31274 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.79■□□□□ 0.6
HOXC9P31274 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC9P31274 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC18.79■□□□□ 0.6
HOXC9P31274 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC9P31274 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC9P31274 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC9P31274 FAM86B3P-203ENST00000523992 854 ntBASIC18.79■□□□□ 0.6
HOXC9P31274 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC18.79■□□□□ 0.6
HOXC9P31274 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC18.79■□□□□ 0.6
HOXC9P31274 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
HOXC9P31274 RN7SL556P-201ENST00000582856 298 ntBASIC18.79■□□□□ 0.6
HOXC9P31274 AC006483.2-201ENST00000609813 515 ntBASIC18.79■□□□□ 0.6
HOXC9P31274 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
HOXC9P31274 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC9P31274 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC18.79■□□□□ 0.6
HOXC9P31274 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
HOXC9P31274 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC18.79■□□□□ 0.6
HOXC9P31274 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
HOXC9P31274 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC9P31274 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC18.79■□□□□ 0.6
HOXC9P31274 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC9P31274 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
HOXC9P31274 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC9P31274 AC068760.1-201ENST00000493579 1953 ntBASIC18.79■□□□□ 0.6
HOXC9P31274 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
HOXC9P31274 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
HOXC9P31274 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
HOXC9P31274 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC9P31274 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
HOXC9P31274 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC18.78■□□□□ 0.6
HOXC9P31274 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
HOXC9P31274 AC004554.1-201ENST00000422830 1468 ntBASIC18.78■□□□□ 0.6
HOXC9P31274 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC18.78■□□□□ 0.6
HOXC9P31274 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC9P31274 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC9P31274 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC18.78■□□□□ 0.6
HOXC9P31274 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
HOXC9P31274 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC9P31274 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC9P31274 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC9P31274 AC015909.5-201ENST00000624336 2266 ntBASIC18.78■□□□□ 0.6
HOXC9P31274 USP17L6P-201ENST00000382470 1197 ntBASIC18.78■□□□□ 0.6
HOXC9P31274 AC073210.1-201ENST00000414799 232 ntBASIC18.78■□□□□ 0.6
HOXC9P31274 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
HOXC9P31274 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC9P31274 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC18.78■□□□□ 0.6
HOXC9P31274 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC18.78■□□□□ 0.6
HOXC9P31274 PFN2-212ENST00000490975 858 ntTSL 4 BASIC18.78■□□□□ 0.6
HOXC9P31274 AC008026.2-201ENST00000495438 348 ntBASIC18.78■□□□□ 0.6
HOXC9P31274 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC9P31274 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC18.78■□□□□ 0.6
HOXC9P31274 GOLGA2P7-209ENST00000560408 745 ntBASIC18.78■□□□□ 0.6
HOXC9P31274 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC18.78■□□□□ 0.6
HOXC9P31274 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC18.78■□□□□ 0.6
HOXC9P31274 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC18.78■□□□□ 0.6
HOXC9P31274 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC9P31274 AL365181.1-201ENST00000564032 1828 ntBASIC18.78■□□□□ 0.6
HOXC9P31274 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC9P31274 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC9P31274 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC18.78■□□□□ 0.6
HOXC9P31274 PHB-210ENST00000511832 1509 ntTSL 2 BASIC18.78■□□□□ 0.6
HOXC9P31274 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
HOXC9P31274 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC9P31274 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC9P31274 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC18.78■□□□□ 0.6
HOXC9P31274 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC9P31274 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
HOXC9P31274 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
HOXC9P31274 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC9P31274 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
HOXC9P31274 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC9P31274 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC9P31274 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
HOXC9P31274 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC9P31274 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC18.77■□□□□ 0.6
HOXC9P31274 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC9P31274 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC18.77■□□□□ 0.6
HOXC9P31274 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC18.77■□□□□ 0.6
HOXC9P31274 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC9P31274 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC9P31274 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC9P31274 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC9P31274 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC18.77■□□□□ 0.6
HOXC9P31274 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC18.77■□□□□ 0.6
HOXC9P31274 EEF1DP2-201ENST00000433698 843 ntBASIC18.77■□□□□ 0.6
HOXC9P31274 KRT18P62-201ENST00000446618 1287 ntBASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms