Protein–RNA interactions for Protein: E9PIF3

NPIPA2, Nuclear pore complex-interacting protein family member A2, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA2E9PIF3 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 AC015688.4-201ENST00000580780 1647 ntBASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 AC007274.2-201ENST00000421675 662 ntBASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 PTPA-217ENST00000434095 870 ntTSL 2 BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 AL157407.1-201ENST00000435784 904 ntBASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 TPT1P11-201ENST00000458482 498 ntBASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 AL353726.2-201ENST00000623259 884 ntBASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC13.22□□□□□ -0.29
NPIPA2E9PIF3 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 GGCT-203ENST00000409144 836 ntTSL 2 BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 HINT2P1-201ENST00000419438 481 ntBASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 ISCA2P1-201ENST00000425548 448 ntBASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 AL596276.2-201ENST00000447525 331 ntBASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 FADS2-212ENST00000522639 360 ntTSL 5 BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 RBM8B-201ENST00000555532 525 ntBASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 FADS2-215ENST00000574708 385 ntTSL 3 BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 CENPX-208ENST00000584347 799 ntTSL 2 BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 AC020922.3-201ENST00000595064 547 ntBASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
NPIPA2E9PIF3 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
NPIPA2E9PIF3 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
NPIPA2E9PIF3 AC144522.1-201ENST00000625111 1658 ntBASIC13.21□□□□□ -0.3
NPIPA2E9PIF3 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC13.21□□□□□ -0.3
NPIPA2E9PIF3 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC13.21□□□□□ -0.3
NPIPA2E9PIF3 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
NPIPA2E9PIF3 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
NPIPA2E9PIF3 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
NPIPA2E9PIF3 AGGF1P1-201ENST00000509500 2073 ntBASIC13.2□□□□□ -0.3
NPIPA2E9PIF3 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC13.2□□□□□ -0.3
NPIPA2E9PIF3 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC13.2□□□□□ -0.3
NPIPA2E9PIF3 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC13.2□□□□□ -0.3
NPIPA2E9PIF3 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
NPIPA2E9PIF3 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
NPIPA2E9PIF3 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
NPIPA2E9PIF3 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
NPIPA2E9PIF3 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NPIPA2E9PIF3 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NPIPA2E9PIF3 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NPIPA2E9PIF3 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC13.2□□□□□ -0.3
NPIPA2E9PIF3 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms