Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 HERC2P11-201ENST00000562845 725 ntBASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 NDUFB10P1-201ENST00000567319 521 ntBASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 AC100756.2-201ENST00000569537 736 ntBASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 AP001065.2-201ENST00000617205 644 ntBASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.28■□□□□ 0.04
PAAF1Q9BRP4 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 AP000911.2-201ENST00000534330 502 ntBASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 CR383656.3-201ENST00000551315 183 ntBASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 AC138701.2-201ENST00000553634 226 ntBASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 RN7SL665P-201ENST00000578793 300 ntBASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 GMFG-209ENST00000600322 622 ntTSL 5 BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 MIR6858-201ENST00000620733 67 ntBASIC15.27■□□□□ 0.04
PAAF1Q9BRP4 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC15.27■□□□□ 0.03
PAAF1Q9BRP4 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
PAAF1Q9BRP4 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
PAAF1Q9BRP4 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC15.27■□□□□ 0.03
PAAF1Q9BRP4 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC15.27■□□□□ 0.03
PAAF1Q9BRP4 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PAAF1Q9BRP4 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PAAF1Q9BRP4 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PAAF1Q9BRP4 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PAAF1Q9BRP4 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 ERP29P1-201ENST00000442902 706 ntBASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 RNA5SP417-201ENST00000516459 108 ntBASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 MBP-227ENST00000526111 581 ntTSL 4 BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 AC007952.4-201ENST00000573866 637 ntBASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms