Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 FES-203ENST00000394302 2133 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 USP17L6P-201ENST00000382470 1197 ntBASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 CDK4P1-201ENST00000454213 828 ntBASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 RN7SL578P-201ENST00000477781 283 ntBASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 MYB-242ENST00000618728 3545 ntTSL 5 BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 AC093700.1-201ENST00000503348 717 ntBASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 SEPHS2P1-201ENST00000511618 1162 ntBASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CCDC88AQ3V6T2 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 BX679664.3-201ENST00000414070 555 ntBASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 HNRNPA1P25-201ENST00000422644 937 ntBASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 RHOQP2-201ENST00000449922 579 ntBASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 AC113935.1-201ENST00000471722 555 ntBASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 GOLGA2P8-201ENST00000505201 779 ntBASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 RN7SKP155-201ENST00000516031 288 ntBASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 KRT8P30-201ENST00000432100 650 ntBASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 RN7SL455P-201ENST00000580629 282 ntBASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms