Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC12.99□□□□□ -0.33
SCN1BQ07699 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 MAOA-204ENST00000542639 5438 ntTSL 2 BASIC12.99□□□□□ -0.33
SCN1BQ07699 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 INCENP-202ENST00000394818 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 LPO-203ENST00000421678 2729 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC12.99□□□□□ -0.33
SCN1BQ07699 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC12.99□□□□□ -0.33
SCN1BQ07699 AC011840.2-201ENST00000563063 1520 ntBASIC12.99□□□□□ -0.33
SCN1BQ07699 CLK3P2-201ENST00000427566 1453 ntBASIC12.99□□□□□ -0.33
SCN1BQ07699 RBM47-201ENST00000295971 4056 ntAPPRIS ALT1 TSL 5 BASIC12.99□□□□□ -0.33
SCN1BQ07699 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
SCN1BQ07699 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC12.99□□□□□ -0.33
SCN1BQ07699 LCA5-202ENST00000392959 4719 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 PKIG-203ENST00000372887 769 ntTSL 3 BASIC12.99□□□□□ -0.33
SCN1BQ07699 PON3-203ENST00000427422 894 ntTSL 3 BASIC12.99□□□□□ -0.33
SCN1BQ07699 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC12.99□□□□□ -0.33
SCN1BQ07699 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
SCN1BQ07699 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC12.99□□□□□ -0.33
SCN1BQ07699 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC12.99□□□□□ -0.33
SCN1BQ07699 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC12.99□□□□□ -0.33
SCN1BQ07699 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC12.99□□□□□ -0.33
SCN1BQ07699 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC12.99□□□□□ -0.33
SCN1BQ07699 AL844908.2-201ENST00000609461 460 ntBASIC12.99□□□□□ -0.33
SCN1BQ07699 TEX48-202ENST00000612244 662 ntTSL 3 BASIC12.99□□□□□ -0.33
SCN1BQ07699 AC106028.4-201ENST00000614509 607 ntBASIC12.99□□□□□ -0.33
SCN1BQ07699 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC12.99□□□□□ -0.33
SCN1BQ07699 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC12.99□□□□□ -0.33
SCN1BQ07699 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC12.99□□□□□ -0.33
SCN1BQ07699 LINC00384-201ENST00000437721 6852 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
SCN1BQ07699 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC12.99□□□□□ -0.33
SCN1BQ07699 MANBAL-201ENST00000373605 1915 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
SCN1BQ07699 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC12.99□□□□□ -0.33
SCN1BQ07699 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC12.99□□□□□ -0.33
SCN1BQ07699 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 ARHGAP20-201ENST00000260283 6189 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 TRAF3-208ENST00000560371 7640 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
SCN1BQ07699 SLC5A5-201ENST00000222248 3576 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC12.99□□□□□ -0.33
SCN1BQ07699 MYO16-205ENST00000457511 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SCN1BQ07699 PTPN5-205ENST00000477854 2826 ntTSL 5 BASIC12.98□□□□□ -0.33
SCN1BQ07699 FAM189A2-204ENST00000455972 2107 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
SCN1BQ07699 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 VENTXP1-201ENST00000569334 2716 ntBASIC12.98□□□□□ -0.33
SCN1BQ07699 HSD17B4-201ENST00000256216 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 ROPN1-206ENST00000479867 2056 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 MKRN5P-201ENST00000445263 1467 ntBASIC12.98□□□□□ -0.33
SCN1BQ07699 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC12.98□□□□□ -0.33
SCN1BQ07699 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
SCN1BQ07699 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC12.98□□□□□ -0.33
SCN1BQ07699 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 LDB3-202ENST00000361373 5297 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
SCN1BQ07699 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 CPLX2-201ENST00000359546 5023 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 SAMD14-202ENST00000330175 4425 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 ZNF71-201ENST00000328070 5428 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
SCN1BQ07699 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC12.98□□□□□ -0.33
SCN1BQ07699 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC12.98□□□□□ -0.33
SCN1BQ07699 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC12.98□□□□□ -0.33
SCN1BQ07699 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC12.98□□□□□ -0.33
SCN1BQ07699 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC12.98□□□□□ -0.33
SCN1BQ07699 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC12.98□□□□□ -0.33
SCN1BQ07699 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC12.98□□□□□ -0.33
SCN1BQ07699 STOM-203ENST00000538954 1257 ntTSL 5 BASIC12.98□□□□□ -0.33
SCN1BQ07699 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC12.98□□□□□ -0.33
SCN1BQ07699 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
SCN1BQ07699 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC12.98□□□□□ -0.33
SCN1BQ07699 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms