Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC13.87□□□□□ -0.19
MSX2P35548 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC13.87□□□□□ -0.19
MSX2P35548 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC13.86□□□□□ -0.19
MSX2P35548 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
MSX2P35548 KIAA1191-202ENST00000393725 2700 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 FAM122B-203ENST00000370790 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
MSX2P35548 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC13.86□□□□□ -0.19
MSX2P35548 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC13.86□□□□□ -0.19
MSX2P35548 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC13.86□□□□□ -0.19
MSX2P35548 HNRNPA3P1-201ENST00000401429 1139 ntBASIC13.86□□□□□ -0.19
MSX2P35548 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
MSX2P35548 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC13.86□□□□□ -0.19
MSX2P35548 HNRNPA3P5-201ENST00000455201 833 ntBASIC13.86□□□□□ -0.19
MSX2P35548 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC13.86□□□□□ -0.19
MSX2P35548 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC13.86□□□□□ -0.19
MSX2P35548 DAD1-205ENST00000543337 501 ntTSL 3 BASIC13.86□□□□□ -0.19
MSX2P35548 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC13.86□□□□□ -0.19
MSX2P35548 SSH2-210ENST00000582084 560 ntTSL 3 BASIC13.86□□□□□ -0.19
MSX2P35548 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC13.86□□□□□ -0.19
MSX2P35548 AC093813.1-201ENST00000605066 256 ntBASIC13.86□□□□□ -0.19
MSX2P35548 RAB34-223ENST00000636154 730 ntTSL 2 BASIC13.86□□□□□ -0.19
MSX2P35548 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 AP003969.2-201ENST00000623739 2275 ntBASIC13.86□□□□□ -0.19
MSX2P35548 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC13.86□□□□□ -0.19
MSX2P35548 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC13.86□□□□□ -0.19
MSX2P35548 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC13.86□□□□□ -0.19
MSX2P35548 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC13.86□□□□□ -0.19
MSX2P35548 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
MSX2P35548 USP3-204ENST00000540797 5474 ntTSL 2 BASIC13.86□□□□□ -0.19
MSX2P35548 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 ICOSLG-203ENST00000400379 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC13.86□□□□□ -0.19
MSX2P35548 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
MSX2P35548 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
MSX2P35548 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC13.86□□□□□ -0.19
MSX2P35548 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
MSX2P35548 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
MSX2P35548 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
MSX2P35548 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC13.85□□□□□ -0.19
MSX2P35548 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
MSX2P35548 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
MSX2P35548 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 MSH2-206ENST00000543555 3024 ntTSL 2 BASIC13.85□□□□□ -0.19
MSX2P35548 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 RN7SKP230-201ENST00000365642 335 ntBASIC13.85□□□□□ -0.19
MSX2P35548 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
MSX2P35548 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC13.85□□□□□ -0.19
MSX2P35548 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC13.85□□□□□ -0.19
MSX2P35548 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC13.85□□□□□ -0.19
MSX2P35548 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC13.85□□□□□ -0.19
MSX2P35548 DNAJB3-201ENST00000446806 729 ntBASIC13.85□□□□□ -0.19
MSX2P35548 FO681548.1-201ENST00000455617 1132 ntBASIC13.85□□□□□ -0.19
MSX2P35548 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC13.85□□□□□ -0.19
MSX2P35548 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
MSX2P35548 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 GCOM2-201ENST00000509133 1104 ntBASIC13.85□□□□□ -0.19
MSX2P35548 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC13.85□□□□□ -0.19
MSX2P35548 AP001582.1-201ENST00000525856 295 ntBASIC13.85□□□□□ -0.19
MSX2P35548 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC13.85□□□□□ -0.19
MSX2P35548 ZNF890P-202ENST00000530367 1156 ntBASIC13.85□□□□□ -0.19
MSX2P35548 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC13.85□□□□□ -0.19
MSX2P35548 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 AC010327.4-202ENST00000591484 748 ntBASIC13.85□□□□□ -0.19
MSX2P35548 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
MSX2P35548 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC13.85□□□□□ -0.19
MSX2P35548 Z92544.3-201ENST00000624747 417 ntBASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms