Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC13.49□□□□□ -0.25
COL5A1P20908 FAM187B2P-201ENST00000577135 713 ntBASIC13.49□□□□□ -0.25
COL5A1P20908 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC13.49□□□□□ -0.25
COL5A1P20908 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC13.49□□□□□ -0.25
COL5A1P20908 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
COL5A1P20908 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
COL5A1P20908 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
COL5A1P20908 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
COL5A1P20908 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
COL5A1P20908 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
COL5A1P20908 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
COL5A1P20908 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.49□□□□□ -0.25
COL5A1P20908 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC13.49□□□□□ -0.25
COL5A1P20908 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
COL5A1P20908 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL5A1P20908 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL5A1P20908 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL5A1P20908 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL5A1P20908 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL5A1P20908 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL5A1P20908 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL5A1P20908 TUBB8P4-201ENST00000511806 1324 ntBASIC13.49□□□□□ -0.25
COL5A1P20908 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.49□□□□□ -0.25
COL5A1P20908 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL5A1P20908 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL5A1P20908 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL5A1P20908 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL5A1P20908 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC13.48□□□□□ -0.25
COL5A1P20908 SNORA57-201ENST00000383870 149 ntBASIC13.48□□□□□ -0.25
COL5A1P20908 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC13.48□□□□□ -0.25
COL5A1P20908 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC13.48□□□□□ -0.25
COL5A1P20908 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
COL5A1P20908 HNRNPA1P5-201ENST00000558213 966 ntBASIC13.48□□□□□ -0.25
COL5A1P20908 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
COL5A1P20908 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC13.48□□□□□ -0.25
COL5A1P20908 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
COL5A1P20908 AC011462.4-201ENST00000616866 449 ntBASIC13.48□□□□□ -0.25
COL5A1P20908 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC13.48□□□□□ -0.25
COL5A1P20908 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC13.48□□□□□ -0.25
COL5A1P20908 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC13.48□□□□□ -0.25
COL5A1P20908 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL5A1P20908 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL5A1P20908 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL5A1P20908 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL5A1P20908 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC13.48□□□□□ -0.25
COL5A1P20908 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL5A1P20908 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL5A1P20908 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL5A1P20908 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL5A1P20908 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL5A1P20908 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC13.48□□□□□ -0.25
COL5A1P20908 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
COL5A1P20908 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL5A1P20908 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL5A1P20908 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
COL5A1P20908 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
COL5A1P20908 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL5A1P20908 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC13.48□□□□□ -0.25
COL5A1P20908 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL5A1P20908 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC13.48□□□□□ -0.25
COL5A1P20908 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL5A1P20908 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
COL5A1P20908 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
COL5A1P20908 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL5A1P20908 DKKL1P1-201ENST00000400550 698 ntBASIC13.48□□□□□ -0.25
COL5A1P20908 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
COL5A1P20908 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC13.48□□□□□ -0.25
COL5A1P20908 VENTXP4-201ENST00000449029 958 ntBASIC13.48□□□□□ -0.25
COL5A1P20908 CD81-209ENST00000492627 886 ntTSL 3 BASIC13.48□□□□□ -0.25
COL5A1P20908 CASP3-205ENST00000517513 964 ntTSL 5 BASIC13.48□□□□□ -0.25
COL5A1P20908 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC13.48□□□□□ -0.25
COL5A1P20908 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC13.48□□□□□ -0.25
COL5A1P20908 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL5A1P20908 AC007191.1-201ENST00000623179 2995 ntBASIC13.48□□□□□ -0.25
COL5A1P20908 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC13.48□□□□□ -0.25
COL5A1P20908 AC026336.4-201ENST00000624565 1050 ntBASIC13.48□□□□□ -0.25
COL5A1P20908 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL5A1P20908 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL5A1P20908 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
COL5A1P20908 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.48□□□□□ -0.25
COL5A1P20908 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC13.48□□□□□ -0.25
COL5A1P20908 RER1-203ENST00000378513 3000 ntTSL 3 BASIC13.47□□□□□ -0.25
COL5A1P20908 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL5A1P20908 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
COL5A1P20908 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL5A1P20908 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC13.47□□□□□ -0.25
COL5A1P20908 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
COL5A1P20908 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
COL5A1P20908 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC13.47□□□□□ -0.25
COL5A1P20908 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL5A1P20908 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL5A1P20908 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL5A1P20908 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC13.47□□□□□ -0.25
COL5A1P20908 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL5A1P20908 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC13.47□□□□□ -0.25
COL5A1P20908 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL5A1P20908 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL5A1P20908 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC13.47□□□□□ -0.25
COL5A1P20908 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC13.47□□□□□ -0.25
COL5A1P20908 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms