Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
CKS1BP61024 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CKS1BP61024 RBM39-205ENST00000397370 612 ntTSL 2 BASIC10.28□□□□□ -0.76
CKS1BP61024 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC10.28□□□□□ -0.76
CKS1BP61024 AC023274.1-201ENST00000418278 595 ntBASIC10.28□□□□□ -0.76
CKS1BP61024 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CKS1BP61024 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC10.28□□□□□ -0.76
CKS1BP61024 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC10.28□□□□□ -0.76
CKS1BP61024 TSFM-210ENST00000550559 897 ntTSL 5 BASIC10.28□□□□□ -0.76
CKS1BP61024 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC10.28□□□□□ -0.76
CKS1BP61024 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
CKS1BP61024 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC10.28□□□□□ -0.76
CKS1BP61024 AC018529.1-201ENST00000613063 361 ntBASIC10.28□□□□□ -0.76
CKS1BP61024 SERF2-217ENST00000630046 862 ntTSL 5 BASIC10.28□□□□□ -0.76
CKS1BP61024 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC10.28□□□□□ -0.76
CKS1BP61024 INCENP-201ENST00000278849 3698 ntAPPRIS P3 TSL 5 BASIC10.28□□□□□ -0.76
CKS1BP61024 PRRC2A-202ENST00000376033 6893 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CKS1BP61024 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
CKS1BP61024 PNMA5-203ENST00000439251 3213 ntAPPRIS P2 TSL 1 (best) BASIC10.28□□□□□ -0.76
CKS1BP61024 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CKS1BP61024 NKAP-201ENST00000371410 5963 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CKS1BP61024 REST-208ENST00000619101 7114 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CKS1BP61024 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CKS1BP61024 POLD1-201ENST00000440232 3444 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CKS1BP61024 ATP2C1-221ENST00000513801 3439 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
CKS1BP61024 ADARB1-214ENST00000629643 4583 ntTSL 5 BASIC10.28□□□□□ -0.76
CKS1BP61024 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC10.28□□□□□ -0.76
CKS1BP61024 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
CKS1BP61024 PTCH1-207ENST00000429896 6563 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
CKS1BP61024 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC10.28□□□□□ -0.76
CKS1BP61024 COX18-201ENST00000295890 6846 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.76
CKS1BP61024 AC005695.1-201ENST00000574307 5672 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
CKS1BP61024 PDXDC2P-NPIPB14P-205ENST00000531894 4184 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
CKS1BP61024 CPN2-201ENST00000323830 3028 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CKS1BP61024 ENDOV-203ENST00000517795 2548 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
CKS1BP61024 LINC00638-201ENST00000555578 2518 ntBASIC10.28□□□□□ -0.76
CKS1BP61024 TVP23A-201ENST00000299866 3360 ntAPPRIS P1 TSL 2 BASIC10.28□□□□□ -0.76
CKS1BP61024 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC10.28□□□□□ -0.76
CKS1BP61024 ST3GAL6-228ENST00000613264 3399 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
CKS1BP61024 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
CKS1BP61024 PERP-201ENST00000421351 4290 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
CKS1BP61024 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC10.27□□□□□ -0.76
CKS1BP61024 TENM3-204ENST00000511685 10896 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.76
CKS1BP61024 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC10.27□□□□□ -0.76
CKS1BP61024 REXO5-208ENST00000564274 2447 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
CKS1BP61024 SNX14-201ENST00000314673 3486 ntAPPRIS P4 TSL 1 (best) BASIC10.27□□□□□ -0.76
CKS1BP61024 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
CKS1BP61024 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC10.27□□□□□ -0.76
CKS1BP61024 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC10.27□□□□□ -0.76
CKS1BP61024 SP7-202ENST00000536324 3151 ntAPPRIS P1 TSL 2 BASIC10.27□□□□□ -0.77
CKS1BP61024 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC10.27□□□□□ -0.77
CKS1BP61024 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC10.27□□□□□ -0.77
CKS1BP61024 CADM3-202ENST00000368125 3745 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
CKS1BP61024 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC10.27□□□□□ -0.77
CKS1BP61024 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC10.27□□□□□ -0.77
CKS1BP61024 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC10.27□□□□□ -0.77
CKS1BP61024 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
CKS1BP61024 TIAM1-206ENST00000541036 7018 ntTSL 5 BASIC10.27□□□□□ -0.77
CKS1BP61024 ROBO4-208ENST00000533054 3071 ntTSL 2 BASIC10.27□□□□□ -0.77
CKS1BP61024 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC10.27□□□□□ -0.77
CKS1BP61024 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
CKS1BP61024 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
CKS1BP61024 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC10.27□□□□□ -0.77
CKS1BP61024 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
CKS1BP61024 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
CKS1BP61024 AC004945.1-201ENST00000416738 983 ntBASIC10.27□□□□□ -0.77
CKS1BP61024 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC10.27□□□□□ -0.77
CKS1BP61024 KRT18P32-201ENST00000424695 1287 ntBASIC10.27□□□□□ -0.77
CKS1BP61024 MTND6P24-201ENST00000440466 518 ntBASIC10.27□□□□□ -0.77
CKS1BP61024 USP40-206ENST00000443711 628 ntTSL 2 BASIC10.27□□□□□ -0.77
CKS1BP61024 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC10.27□□□□□ -0.77
CKS1BP61024 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC10.27□□□□□ -0.77
CKS1BP61024 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
CKS1BP61024 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC10.27□□□□□ -0.77
CKS1BP61024 SLED1-202ENST00000512051 380 ntBASIC10.27□□□□□ -0.77
CKS1BP61024 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC10.27□□□□□ -0.77
CKS1BP61024 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
CKS1BP61024 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC10.27□□□□□ -0.77
CKS1BP61024 LINC01225-203ENST00000563550 1244 ntBASIC10.27□□□□□ -0.77
CKS1BP61024 AC040169.1-201ENST00000565382 521 ntBASIC10.27□□□□□ -0.77
CKS1BP61024 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC10.27□□□□□ -0.77
CKS1BP61024 COX5A-206ENST00000568783 571 ntTSL 3 BASIC10.27□□□□□ -0.77
CKS1BP61024 PRR29-209ENST00000582540 967 ntTSL 2 BASIC10.27□□□□□ -0.77
CKS1BP61024 PIN1-206ENST00000587625 878 ntTSL 2 BASIC10.27□□□□□ -0.77
CKS1BP61024 SSH2-211ENST00000590153 570 ntTSL 4 BASIC10.27□□□□□ -0.77
CKS1BP61024 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC10.27□□□□□ -0.77
CKS1BP61024 MIR6069-201ENST00000620069 79 ntBASIC10.27□□□□□ -0.77
CKS1BP61024 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
CKS1BP61024 PRDM16-208ENST00000514189 4236 ntAPPRIS ALT2 TSL 5 BASIC10.27□□□□□ -0.77
CKS1BP61024 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
CKS1BP61024 POLDIP3-209ENST00000617178 2006 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
CKS1BP61024 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
CKS1BP61024 ZBTB45P1-201ENST00000452761 1456 ntBASIC10.27□□□□□ -0.77
CKS1BP61024 AC107375.1-201ENST00000564464 2231 ntBASIC10.27□□□□□ -0.77
CKS1BP61024 GPHN-203ENST00000478722 4297 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
CKS1BP61024 TAX1BP1-207ENST00000433216 3174 ntTSL 2 BASIC10.27□□□□□ -0.77
CKS1BP61024 LINC01019-201ENST00000505443 3199 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
CKS1BP61024 ELN-204ENST00000357036 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
CKS1BP61024 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.77
CKS1BP61024 TBC1D14-208ENST00000451522 4149 ntAPPRIS ALT1 TSL 5 BASIC10.27□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms