RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 NISCHQ9Y2I1 1504 aa25.38■■□□□ 1.65
PTCH1-207ENST00000429896 DCAF8L2P0C7V8 631 aa24.04■■□□□ 1.44
PTCH1-207ENST00000429896 SHROOM4Q9ULL8 1493 aa22.48■■□□□ 1.19
PTCH1-207ENST00000429896 SUPT5HO00267 1087 aaKnown RBP22.15■■□□□ 1.14
PTCH1-207ENST00000429896 ABCC9O60706 1549 aa22.03■■□□□ 1.12
PTCH1-207ENST00000429896 CCDC180Q9P1Z9 1646 aa21.61■■□□□ 1.05
PTCH1-207ENST00000429896 PABPN1Q86U42 306 aaKnown RBP eCLIP21.32■■□□□ 1
PTCH1-207ENST00000429896 ZCCHC6Q5VYS8 1495 aaKnown RBP21.06■□□□□ 0.96
PTCH1-207ENST00000429896 RB1CC1Q8TDY2 1594 aa20.93■□□□□ 0.94
PTCH1-207ENST00000429896 EHMT2Q96KQ7 1210 aa20.92■□□□□ 0.94
PTCH1-207ENST00000429896 SCRIBQ14160 1630 aa20.86■□□□□ 0.93
PTCH1-207ENST00000429896 NACADO15069 1562 aa20.77■□□□□ 0.92
PTCH1-207ENST00000429896 TRIM41Q8WV44 630 aa20.74■□□□□ 0.91
PTCH1-207ENST00000429896 FAM9AQ8IZU1 332 aaPredicted RBP20.73■□□□□ 0.91
PTCH1-207ENST00000429896 APLP2Q06481 763 aa20.49■□□□□ 0.87
PTCH1-207ENST00000429896 DCAF1Q9Y4B6 1507 aa20.44■□□□□ 0.86
PTCH1-207ENST00000429896 RANGAP1P46060 587 aaPredicted RBP20.41■□□□□ 0.86
PTCH1-207ENST00000429896 UBTFP17480 764 aaKnown RBP20.31■□□□□ 0.84
PTCH1-207ENST00000429896 ATP1B4Q9UN42 357 aaPredicted RBP20.21■□□□□ 0.83
PTCH1-207ENST00000429896 MYO15BQ96JP2 1530 aa20.14■□□□□ 0.82
PTCH1-207ENST00000429896 TTBK1Q5TCY1 1321 aaPredicted RBP20.02■□□□□ 0.8
PTCH1-207ENST00000429896 CHIC1Q5VXU3 224 aa19.99■□□□□ 0.79
PTCH1-207ENST00000429896 BAZ1BQ9UIG0 1483 aaKnown RBP19.93■□□□□ 0.78
PTCH1-207ENST00000429896 BAZ1AQ9NRL2 1556 aaPredicted RBP19.89■□□□□ 0.78
PTCH1-207ENST00000429896 RSF1Q96T23 1441 aaPredicted RBP19.88■□□□□ 0.77
PTCH1-207ENST00000429896 FBLN2P98095 1184 aa19.87■□□□□ 0.77
PTCH1-207ENST00000429896 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.84■□□□□ 0.77
PTCH1-207ENST00000429896 HNRNPUL2Q1KMD3 747 aaKnown RBP19.84■□□□□ 0.77
PTCH1-207ENST00000429896 CECR2Q9BXF3 1484 aa19.8■□□□□ 0.76
PTCH1-207ENST00000429896 SMARCA2P51531 1590 aa19.65■□□□□ 0.74
PTCH1-207ENST00000429896 ERCC6Q03468 1493 aa19.65■□□□□ 0.74
PTCH1-207ENST00000429896 LOC105371045A0A1W2PR82 267 aa19.62■□□□□ 0.73
PTCH1-207ENST00000429896 MROH2BQ7Z745 1585 aa19.58■□□□□ 0.72
PTCH1-207ENST00000429896 MYT1LQ9UL68 1186 aa19.56■□□□□ 0.72
PTCH1-207ENST00000429896 PELP1Q8IZL8 1130 aaKnown RBP19.51■□□□□ 0.71
PTCH1-207ENST00000429896 CSRNP3Q8WYN3 585 aa19.51■□□□□ 0.71
PTCH1-207ENST00000429896 PPARGC1BQ86YN6 1023 aaKnown RBP19.48■□□□□ 0.71
PTCH1-207ENST00000429896 PCGF6Q9BYE7 350 aa19.43■□□□□ 0.7
PTCH1-207ENST00000429896 ATAD2BQ9ULI0 1458 aa19.41■□□□□ 0.7
PTCH1-207ENST00000429896 SMARCA4P51532 1647 aa19.4■□□□□ 0.7
PTCH1-207ENST00000429896 CHMP7Q8WUX9 453 aaPredicted RBP19.39■□□□□ 0.69
PTCH1-207ENST00000429896 PDS5BQ9NTI5 1447 aa19.37■□□□□ 0.69
PTCH1-207ENST00000429896 WRNQ14191 1432 aaPredicted RBP eCLIP19.35■□□□□ 0.69
PTCH1-207ENST00000429896 P3H3Q8IVL6 736 aa19.33■□□□□ 0.69
PTCH1-207ENST00000429896 TOP2AP11388 1531 aaKnown RBP19.33■□□□□ 0.68
PTCH1-207ENST00000429896 CCDC88BA6NC98 1476 aa19.33■□□□□ 0.68
PTCH1-207ENST00000429896 WIZO95785 1651 aa19.31■□□□□ 0.68
PTCH1-207ENST00000429896 ITGAEP38570 1179 aa19.3■□□□□ 0.68
PTCH1-207ENST00000429896 EIF4G1Q04637 1599 aaKnown RBP19.29■□□□□ 0.68
PTCH1-207ENST00000429896 CADPSQ9ULU8 1353 aa19.24■□□□□ 0.67
PTCH1-207ENST00000429896 CCER1Q8TC90 406 aaPredicted RBP19.22■□□□□ 0.67
PTCH1-207ENST00000429896 ARID3CA6NKF2 412 aa19.21■□□□□ 0.67
PTCH1-207ENST00000429896 NPM1P06748 294 aaKnown RBP eCLIP19.2■□□□□ 0.66
PTCH1-207ENST00000429896 KIF27Q86VH2 1401 aa19.15■□□□□ 0.66
PTCH1-207ENST00000429896 ERICH6Q7L0X2 663 aa19.15■□□□□ 0.66
PTCH1-207ENST00000429896 NCAPD3P42695 1498 aa19.14■□□□□ 0.65
PTCH1-207ENST00000429896 FAM50AQ14320 339 aaKnown RBP19.13■□□□□ 0.65
PTCH1-207ENST00000429896 CDK11AQ9UQ88 783 aaPredicted RBP19.13■□□□□ 0.65
PTCH1-207ENST00000429896 TRIM26Q12899 539 aaPredicted RBP19.11■□□□□ 0.65
PTCH1-207ENST00000429896 CC2D2AQ9P2K1 1620 aa19.09■□□□□ 0.65
PTCH1-207ENST00000429896 EEA1Q15075 1411 aa19.09■□□□□ 0.65
PTCH1-207ENST00000429896 CEP164Q9UPV0 1460 aa19.08■□□□□ 0.64
PTCH1-207ENST00000429896 BICRAQ9NZM4 1560 aa19.07■□□□□ 0.64
PTCH1-207ENST00000429896 CUX2O14529 1486 aa19.01■□□□□ 0.63
PTCH1-207ENST00000429896 SOGA1O94964 1423 aa19■□□□□ 0.63
PTCH1-207ENST00000429896 FANCD2Q9BXW9 1451 aa19■□□□□ 0.63
PTCH1-207ENST00000429896 ZEB1P37275 1124 aaPredicted RBP18.98■□□□□ 0.63
PTCH1-207ENST00000429896 ZNF777Q9ULD5 760 aaPredicted RBP18.94■□□□□ 0.62
PTCH1-207ENST00000429896 YTHDC1Q96MU7 727 aaKnown RBP18.93■□□□□ 0.62
PTCH1-207ENST00000429896 GOLGA3Q08378 1498 aa18.93■□□□□ 0.62
PTCH1-207ENST00000429896 ABCC8Q09428 1581 aa18.92■□□□□ 0.62
PTCH1-207ENST00000429896 TDRD9Q8NDG6 1382 aaKnown RBP18.89■□□□□ 0.61
PTCH1-207ENST00000429896 HMGXB3Q12766 1538 aa18.89■□□□□ 0.61
PTCH1-207ENST00000429896 TRIM52Q96A61 297 aa18.88■□□□□ 0.61
PTCH1-207ENST00000429896 CARMIL1Q5VZK9 1371 aa18.88■□□□□ 0.61
PTCH1-207ENST00000429896 DNAJC5BQ9UF47 199 aa18.86■□□□□ 0.61
PTCH1-207ENST00000429896 CLIP1P30622 1438 aa18.84■□□□□ 0.61
PTCH1-207ENST00000429896 UNC13AQ9UPW8 1703 aa18.81■□□□□ 0.6
PTCH1-207ENST00000429896 PLEKHD1A6NEE1 506 aa18.74■□□□□ 0.59
PTCH1-207ENST00000429896 KCNH8Q96L42 1107 aa18.74■□□□□ 0.59
PTCH1-207ENST00000429896 MTUS2Q5JR59 1369 aa18.73■□□□□ 0.59
PTCH1-207ENST00000429896 NESP48681 1621 aa18.72■□□□□ 0.59
PTCH1-207ENST00000429896 ESF1Q9H501 851 aaKnown RBP18.71■□□□□ 0.59
PTCH1-207ENST00000429896 HRCP23327 699 aa18.71■□□□□ 0.59
PTCH1-207ENST00000429896 CFTRP13569 1480 aa18.7■□□□□ 0.58
PTCH1-207ENST00000429896 CENPBP07199 599 aaPredicted RBP18.69■□□□□ 0.58
PTCH1-207ENST00000429896 TNIKQ9UKE5 1360 aa18.69■□□□□ 0.58
PTCH1-207ENST00000429896 MYT1Q01538 1121 aa18.67■□□□□ 0.58
PTCH1-207ENST00000429896 CEP162Q5TB80 1403 aa18.67■□□□□ 0.58
PTCH1-207ENST00000429896 CNGB1Q14028 1251 aaPredicted RBP18.67■□□□□ 0.58
PTCH1-207ENST00000429896 MRC2Q9UBG0 1479 aa18.66■□□□□ 0.58
PTCH1-207ENST00000429896 CARMIL2Q6F5E8 1435 aa18.65■□□□□ 0.58
PTCH1-207ENST00000429896 FGD5Q6ZNL6 1462 aa18.64■□□□□ 0.57
PTCH1-207ENST00000429896 POLR3GLQ9BT43 218 aa18.63■□□□□ 0.57
PTCH1-207ENST00000429896 RAD54L2Q9Y4B4 1467 aa18.57■□□□□ 0.56
PTCH1-207ENST00000429896 TSPY4P0CV99 314 aa18.57■□□□□ 0.56
PTCH1-207ENST00000429896 TSPY10P0CW01 314 aa18.57■□□□□ 0.56
PTCH1-207ENST00000429896 OSCARQ8IYS5 282 aa18.57■□□□□ 0.56
PTCH1-207ENST00000429896 RAPGEF2Q9Y4G8 1499 aa18.57■□□□□ 0.56
PTCH1-207ENST00000429896 TRHP20396 242 aaPredicted RBP18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms