Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.78■□□□□ 0.28
COL4A5P29400 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
COL4A5P29400 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A5P29400 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A5P29400 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A5P29400 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A5P29400 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A5P29400 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A5P29400 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A5P29400 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
COL4A5P29400 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A5P29400 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A5P29400 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A5P29400 CCL25-202ENST00000315626 450 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A5P29400 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A5P29400 IL37-204ENST00000352179 709 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A5P29400 HMGA1P1-201ENST00000415560 1062 ntBASIC16.78■□□□□ 0.28
COL4A5P29400 CCND3P1-201ENST00000438347 580 ntBASIC16.78■□□□□ 0.28
COL4A5P29400 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC16.78■□□□□ 0.28
COL4A5P29400 AL031587.2-201ENST00000445483 414 ntTSL 5 BASIC16.78■□□□□ 0.28
COL4A5P29400 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC16.78■□□□□ 0.28
COL4A5P29400 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A5P29400 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A5P29400 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
COL4A5P29400 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A5P29400 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
COL4A5P29400 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A5P29400 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A5P29400 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
COL4A5P29400 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A5P29400 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
COL4A5P29400 FAHD2B-201ENST00000272610 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A5P29400 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A5P29400 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A5P29400 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
COL4A5P29400 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A5P29400 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A5P29400 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A5P29400 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.77■□□□□ 0.28
COL4A5P29400 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A5P29400 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
COL4A5P29400 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A5P29400 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A5P29400 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A5P29400 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A5P29400 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
COL4A5P29400 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
COL4A5P29400 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
COL4A5P29400 PYM1-203ENST00000408946 1226 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A5P29400 BX072579.1-201ENST00000449453 344 ntTSL 3 BASIC16.77■□□□□ 0.28
COL4A5P29400 TPT1P6-201ENST00000458298 514 ntBASIC16.77■□□□□ 0.28
COL4A5P29400 AC099328.1-201ENST00000498809 1030 ntBASIC16.77■□□□□ 0.28
COL4A5P29400 SRPK2P-201ENST00000523408 1100 ntBASIC16.77■□□□□ 0.28
COL4A5P29400 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC16.77■□□□□ 0.28
COL4A5P29400 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC16.77■□□□□ 0.28
COL4A5P29400 AC142086.5-202ENST00000562500 217 ntBASIC16.77■□□□□ 0.28
COL4A5P29400 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC16.77■□□□□ 0.28
COL4A5P29400 MIR4326-201ENST00000582203 59 ntBASIC16.77■□□□□ 0.28
COL4A5P29400 AL162731.1-201ENST00000613248 876 ntTSL 3 BASIC16.77■□□□□ 0.28
COL4A5P29400 AC009041.4-201ENST00000620075 638 ntBASIC16.77■□□□□ 0.28
COL4A5P29400 AC005865.2-202ENST00000635814 725 ntBASIC16.77■□□□□ 0.28
COL4A5P29400 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL4A5P29400 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL4A5P29400 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
COL4A5P29400 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL4A5P29400 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL4A5P29400 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL4A5P29400 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL4A5P29400 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL4A5P29400 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL4A5P29400 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A5P29400 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
COL4A5P29400 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
COL4A5P29400 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC16.76■□□□□ 0.27
COL4A5P29400 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC16.76■□□□□ 0.27
COL4A5P29400 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
COL4A5P29400 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A5P29400 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A5P29400 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A5P29400 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC16.76■□□□□ 0.27
COL4A5P29400 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC16.76■□□□□ 0.27
COL4A5P29400 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC16.76■□□□□ 0.27
COL4A5P29400 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
COL4A5P29400 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A5P29400 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A5P29400 KRTAP12-2-201ENST00000360770 739 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
COL4A5P29400 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC16.76■□□□□ 0.27
COL4A5P29400 SNRPD2P2-201ENST00000473818 333 ntBASIC16.76■□□□□ 0.27
COL4A5P29400 LY6E-215ENST00000523847 427 ntTSL 3 BASIC16.76■□□□□ 0.27
COL4A5P29400 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC16.76■□□□□ 0.27
COL4A5P29400 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC16.76■□□□□ 0.27
COL4A5P29400 INO80E-209ENST00000567254 625 ntTSL 2 BASIC16.76■□□□□ 0.27
COL4A5P29400 AC132812.1-201ENST00000583145 892 ntBASIC16.76■□□□□ 0.27
COL4A5P29400 AP001462.1-201ENST00000594089 452 ntBASIC16.76■□□□□ 0.27
COL4A5P29400 PRR20FP-201ENST00000603320 180 ntBASIC16.76■□□□□ 0.27
COL4A5P29400 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A5P29400 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
COL4A5P29400 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A5P29400 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC16.76■□□□□ 0.27
COL4A5P29400 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms