Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL5A1P20908 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL5A1P20908 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC13.51□□□□□ -0.25
COL5A1P20908 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC13.51□□□□□ -0.25
COL5A1P20908 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC13.51□□□□□ -0.25
COL5A1P20908 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL5A1P20908 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
COL5A1P20908 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL5A1P20908 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
COL5A1P20908 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL5A1P20908 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC13.51□□□□□ -0.25
COL5A1P20908 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL5A1P20908 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
COL5A1P20908 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 SIRPB3P-201ENST00000340424 1216 ntBASIC13.5□□□□□ -0.25
COL5A1P20908 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC13.5□□□□□ -0.25
COL5A1P20908 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC13.5□□□□□ -0.25
COL5A1P20908 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
COL5A1P20908 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC13.5□□□□□ -0.25
COL5A1P20908 NALT1-202ENST00000450304 437 ntTSL 3 BASIC13.5□□□□□ -0.25
COL5A1P20908 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC13.5□□□□□ -0.25
COL5A1P20908 BCRP4-201ENST00000506079 804 ntBASIC13.5□□□□□ -0.25
COL5A1P20908 IGHEP1-201ENST00000521393 651 ntBASIC13.5□□□□□ -0.25
COL5A1P20908 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC13.5□□□□□ -0.25
COL5A1P20908 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC13.5□□□□□ -0.25
COL5A1P20908 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
COL5A1P20908 AC011498.7-201ENST00000624986 2027 ntBASIC13.5□□□□□ -0.25
COL5A1P20908 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
COL5A1P20908 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC13.5□□□□□ -0.25
COL5A1P20908 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC13.5□□□□□ -0.25
COL5A1P20908 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC13.5□□□□□ -0.25
COL5A1P20908 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
COL5A1P20908 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC13.5□□□□□ -0.25
COL5A1P20908 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC13.5□□□□□ -0.25
COL5A1P20908 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
COL5A1P20908 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC13.5□□□□□ -0.25
COL5A1P20908 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC13.5□□□□□ -0.25
COL5A1P20908 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
COL5A1P20908 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 OR10N1P-201ENST00000392758 869 ntBASIC13.5□□□□□ -0.25
COL5A1P20908 AC092570.1-201ENST00000414446 469 ntBASIC13.5□□□□□ -0.25
COL5A1P20908 HMGA1P1-201ENST00000415560 1062 ntBASIC13.5□□□□□ -0.25
COL5A1P20908 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 AC018846.1-201ENST00000568231 183 ntBASIC13.5□□□□□ -0.25
COL5A1P20908 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
COL5A1P20908 GGNBP1-204ENST00000613113 887 ntBASIC13.5□□□□□ -0.25
COL5A1P20908 AC020904.3-201ENST00000624199 442 ntBASIC13.5□□□□□ -0.25
COL5A1P20908 AC020910.6-201ENST00000623084 1459 ntBASIC13.5□□□□□ -0.25
COL5A1P20908 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC13.5□□□□□ -0.25
COL5A1P20908 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
COL5A1P20908 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC13.5□□□□□ -0.25
COL5A1P20908 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL5A1P20908 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL5A1P20908 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL5A1P20908 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL5A1P20908 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL5A1P20908 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC13.49□□□□□ -0.25
COL5A1P20908 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
COL5A1P20908 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
COL5A1P20908 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC13.49□□□□□ -0.25
COL5A1P20908 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC13.49□□□□□ -0.25
COL5A1P20908 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL5A1P20908 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
COL5A1P20908 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC13.49□□□□□ -0.25
COL5A1P20908 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL5A1P20908 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL5A1P20908 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
COL5A1P20908 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
COL5A1P20908 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC13.49□□□□□ -0.25
COL5A1P20908 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC13.49□□□□□ -0.25
COL5A1P20908 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC13.49□□□□□ -0.25
COL5A1P20908 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
COL5A1P20908 AC023906.1-201ENST00000486386 453 ntBASIC13.49□□□□□ -0.25
COL5A1P20908 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC13.49□□□□□ -0.25
COL5A1P20908 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC13.49□□□□□ -0.25
COL5A1P20908 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC13.49□□□□□ -0.25
COL5A1P20908 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL5A1P20908 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms