Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
LRFN1Q9P244 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC13.34□□□□□ -0.27
LRFN1Q9P244 DRG2-220ENST00000583355 891 ntTSL 3 BASIC13.34□□□□□ -0.27
LRFN1Q9P244 MIR3188-201ENST00000583494 85 ntBASIC13.34□□□□□ -0.27
LRFN1Q9P244 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC13.34□□□□□ -0.27
LRFN1Q9P244 AL133499.1-201ENST00000596207 608 ntBASIC13.34□□□□□ -0.27
LRFN1Q9P244 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC13.34□□□□□ -0.27
LRFN1Q9P244 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
LRFN1Q9P244 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC13.34□□□□□ -0.27
LRFN1Q9P244 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC13.34□□□□□ -0.27
LRFN1Q9P244 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC13.34□□□□□ -0.27
LRFN1Q9P244 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
LRFN1Q9P244 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC13.34□□□□□ -0.27
LRFN1Q9P244 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
LRFN1Q9P244 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC13.34□□□□□ -0.27
LRFN1Q9P244 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRFN1Q9P244 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRFN1Q9P244 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC13.34□□□□□ -0.27
LRFN1Q9P244 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRFN1Q9P244 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC13.34□□□□□ -0.27
LRFN1Q9P244 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRFN1Q9P244 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
LRFN1Q9P244 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRFN1Q9P244 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC13.34□□□□□ -0.27
LRFN1Q9P244 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC13.34□□□□□ -0.27
LRFN1Q9P244 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC13.34□□□□□ -0.27
LRFN1Q9P244 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
LRFN1Q9P244 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRFN1Q9P244 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC13.34□□□□□ -0.27
LRFN1Q9P244 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.34□□□□□ -0.27
LRFN1Q9P244 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRFN1Q9P244 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRFN1Q9P244 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
LRFN1Q9P244 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRFN1Q9P244 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
LRFN1Q9P244 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.33□□□□□ -0.27
LRFN1Q9P244 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC13.33□□□□□ -0.27
LRFN1Q9P244 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
LRFN1Q9P244 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC13.33□□□□□ -0.27
LRFN1Q9P244 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LRFN1Q9P244 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LRFN1Q9P244 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
LRFN1Q9P244 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
LRFN1Q9P244 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LRFN1Q9P244 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LRFN1Q9P244 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LRFN1Q9P244 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LRFN1Q9P244 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
LRFN1Q9P244 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LRFN1Q9P244 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
LRFN1Q9P244 TSPY25P-201ENST00000429463 745 ntBASIC13.33□□□□□ -0.28
LRFN1Q9P244 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 AC008723.1-201ENST00000506922 207 ntBASIC13.33□□□□□ -0.28
LRFN1Q9P244 IGLV3-15-201ENST00000518356 244 ntBASIC13.33□□□□□ -0.28
LRFN1Q9P244 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 AC003686.1-201ENST00000550956 1034 ntBASIC13.33□□□□□ -0.28
LRFN1Q9P244 AC027237.1-201ENST00000560942 655 ntBASIC13.33□□□□□ -0.28
LRFN1Q9P244 MIR4754-201ENST00000582477 89 ntBASIC13.33□□□□□ -0.28
LRFN1Q9P244 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LRFN1Q9P244 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC13.33□□□□□ -0.28
LRFN1Q9P244 MIR6769A-201ENST00000617340 73 ntBASIC13.33□□□□□ -0.28
LRFN1Q9P244 AC006453.1-201ENST00000636037 1257 ntBASIC13.33□□□□□ -0.28
LRFN1Q9P244 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LRFN1Q9P244 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LRFN1Q9P244 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 USP35-204ENST00000530267 2419 ntTSL 2 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LRFN1Q9P244 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LRFN1Q9P244 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
LRFN1Q9P244 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LRFN1Q9P244 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
LRFN1Q9P244 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
LRFN1Q9P244 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms