Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP3Q96DZ5 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
CLIP3Q96DZ5 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.15
CLIP3Q96DZ5 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.15
CLIP3Q96DZ5 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 SALL4P5-201ENST00000419001 1760 ntBASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 AC005077.2-201ENST00000449786 690 ntBASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 RNMTL1P1-201ENST00000454103 560 ntBASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 AC106794.1-201ENST00000506935 792 ntBASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 AC044849.1-201ENST00000519737 1188 ntBASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 ACTG1P17-201ENST00000558391 1119 ntBASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 SHC1P1-201ENST00000425230 1745 ntBASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 INTS4P1-203ENST00000641008 3683 ntBASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 AL138725.1-201ENST00000407347 1314 ntBASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 SMTN-203ENST00000358743 3198 ntAPPRIS P4 TSL 2 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CLIP3Q96DZ5 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 SMS-201ENST00000379404 1174 ntTSL 3 BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 TLE1P1-201ENST00000422965 589 ntBASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 IGHJ2P-201ENST00000454480 60 ntBASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 NEU3-202ENST00000526068 431 ntTSL 2 BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 NDUFV2P1-201ENST00000596415 907 ntBASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 AL606495.2-201ENST00000605867 535 ntBASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms