Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 AC004898.1-201ENST00000451057 766 ntBASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 RNMTL1P1-201ENST00000454103 560 ntBASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 RBM8B-201ENST00000555532 525 ntBASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 AC027237.1-201ENST00000560942 655 ntBASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 MIR4538-201ENST00000581377 78 ntBASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 RN7SL163P-201ENST00000583100 276 ntBASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 BNIP3P13-201ENST00000599968 566 ntBASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 Z98259.2-201ENST00000641583 609 ntBASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
NUP54Q7Z3B4 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC13.46□□□□□ -0.26
NUP54Q7Z3B4 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
NUP54Q7Z3B4 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
NUP54Q7Z3B4 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC13.46□□□□□ -0.26
NUP54Q7Z3B4 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC13.46□□□□□ -0.26
NUP54Q7Z3B4 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
NUP54Q7Z3B4 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.46□□□□□ -0.26
NUP54Q7Z3B4 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC13.46□□□□□ -0.26
NUP54Q7Z3B4 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC13.46□□□□□ -0.26
NUP54Q7Z3B4 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC13.46□□□□□ -0.26
NUP54Q7Z3B4 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 FES-203ENST00000394302 2133 ntTSL 5 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 AL645933.1-201ENST00000440087 609 ntBASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 KLF2P1-201ENST00000447438 1042 ntBASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 SERPINA13P-202ENST00000478994 924 ntBASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 SORD2P-201ENST00000558556 1069 ntBASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 AP000346.4-201ENST00000614827 381 ntBASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 RPL35-206ENST00000629845 340 ntTSL 5 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 HARS-202ENST00000415192 1401 ntTSL 2 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC13.45□□□□□ -0.26
NUP54Q7Z3B4 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
NUP54Q7Z3B4 TET3-201ENST00000305799 5174 ntTSL 5 BASIC13.44□□□□□ -0.26
NUP54Q7Z3B4 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC13.44□□□□□ -0.26
NUP54Q7Z3B4 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
NUP54Q7Z3B4 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC13.44□□□□□ -0.26
NUP54Q7Z3B4 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC13.44□□□□□ -0.26
NUP54Q7Z3B4 GRN-222ENST00000639447 1314 ntTSL 2 BASIC13.44□□□□□ -0.26
NUP54Q7Z3B4 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
NUP54Q7Z3B4 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC13.44□□□□□ -0.26
NUP54Q7Z3B4 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
NUP54Q7Z3B4 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC13.44□□□□□ -0.26
NUP54Q7Z3B4 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms