Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 GFAP-214ENST00000588735 6538 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 GOLGA8VP-201ENST00000559009 1798 ntBASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 AC092978.1-202ENST00000637590 1327 ntBASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 AL645937.2-201ENST00000396808 931 ntBASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 RPL17P11-201ENST00000417593 544 ntBASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 OARD1-212ENST00000482515 832 ntTSL 2 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 ACTG1P17-201ENST00000558391 1119 ntBASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 PAM16-204ENST00000571941 674 ntTSL 3 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 AC009542.2-202ENST00000619004 1067 ntBASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 CLK3P2-201ENST00000427566 1453 ntBASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 AL805961.2-201ENST00000642139 4817 ntBASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 NIN-206ENST00000453196 6785 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 LPCAT2-201ENST00000262134 5391 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 MVK-214ENST00000629016 1591 ntTSL 5 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC12.18□□□□□ -0.46
PDLIM3Q53GG5 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 TRABD2B-202ENST00000606738 7034 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 RBL1-202ENST00000373664 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 AC114501.1-201ENST00000445949 172 ntBASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC12.17□□□□□ -0.46
PDLIM3Q53GG5 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms