Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
NKX2-1P43699 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC11.95□□□□□ -0.5
NKX2-1P43699 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC11.95□□□□□ -0.5
NKX2-1P43699 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC11.95□□□□□ -0.5
NKX2-1P43699 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC11.95□□□□□ -0.5
NKX2-1P43699 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 COL6A3-206ENST00000409809 8916 ntTSL 5 BASIC11.95□□□□□ -0.5
NKX2-1P43699 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC11.95□□□□□ -0.5
NKX2-1P43699 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
NKX2-1P43699 PRR12-201ENST00000418929 6955 ntAPPRIS P2 TSL 5 BASIC11.95□□□□□ -0.5
NKX2-1P43699 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC11.95□□□□□ -0.5
NKX2-1P43699 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 LIPE-201ENST00000244289 3813 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC11.95□□□□□ -0.5
NKX2-1P43699 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 AL139094.1-201ENST00000405549 1188 ntBASIC11.95□□□□□ -0.5
NKX2-1P43699 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC11.95□□□□□ -0.5
NKX2-1P43699 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC11.95□□□□□ -0.5
NKX2-1P43699 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC11.95□□□□□ -0.5
NKX2-1P43699 CNN2P11-201ENST00000429351 262 ntBASIC11.95□□□□□ -0.5
NKX2-1P43699 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC11.95□□□□□ -0.5
NKX2-1P43699 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 AC026434.2-201ENST00000506094 1078 ntBASIC11.95□□□□□ -0.5
NKX2-1P43699 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
NKX2-1P43699 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC11.95□□□□□ -0.5
NKX2-1P43699 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC11.95□□□□□ -0.5
NKX2-1P43699 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC11.95□□□□□ -0.5
NKX2-1P43699 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
NKX2-1P43699 SORD2P-201ENST00000558556 1069 ntBASIC11.95□□□□□ -0.5
NKX2-1P43699 SNHG9-202ENST00000564014 471 ntBASIC11.95□□□□□ -0.5
NKX2-1P43699 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 5S_rRNA.22-201ENST00000614916 106 ntBASIC11.95□□□□□ -0.5
NKX2-1P43699 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC11.95□□□□□ -0.5
NKX2-1P43699 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC11.95□□□□□ -0.5
NKX2-1P43699 BX539320.1-201ENST00000623759 877 ntBASIC11.95□□□□□ -0.5
NKX2-1P43699 AL603764.1-201ENST00000636452 321 ntBASIC11.95□□□□□ -0.5
NKX2-1P43699 PRSS30P-206ENST00000641773 873 ntBASIC11.95□□□□□ -0.5
NKX2-1P43699 ZNF862-201ENST00000223210 6950 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
NKX2-1P43699 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 AC073957.3-201ENST00000609998 6758 ntBASIC11.95□□□□□ -0.5
NKX2-1P43699 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
NKX2-1P43699 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 USP22-206ENST00000537526 4976 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC11.95□□□□□ -0.5
NKX2-1P43699 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC11.95□□□□□ -0.5
NKX2-1P43699 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 SMG9-201ENST00000270066 5510 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 AFDN-206ENST00000392112 7459 ntTSL 5 BASIC11.95□□□□□ -0.5
NKX2-1P43699 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC11.95□□□□□ -0.5
NKX2-1P43699 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
NKX2-1P43699 AC135782.3-201ENST00000562782 2105 ntBASIC11.95□□□□□ -0.5
NKX2-1P43699 SLC44A1-202ENST00000374723 9640 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 LPCAT2-201ENST00000262134 5391 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 TNS1-205ENST00000419504 5921 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 TNS1-207ENST00000430930 5900 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
NKX2-1P43699 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC11.95□□□□□ -0.5
NKX2-1P43699 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 GRIA4-201ENST00000282499 5508 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
NKX2-1P43699 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 TNNI1-207ENST00000622580 6142 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC11.94□□□□□ -0.5
NKX2-1P43699 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 RBM47-201ENST00000295971 4056 ntAPPRIS ALT1 TSL 5 BASIC11.94□□□□□ -0.5
NKX2-1P43699 RAPGEF4-AS1-202ENST00000435328 4625 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC11.94□□□□□ -0.5
NKX2-1P43699 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC11.94□□□□□ -0.5
NKX2-1P43699 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC11.94□□□□□ -0.5
NKX2-1P43699 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 MTMR4-204ENST00000579925 5622 ntTSL 5 BASIC11.94□□□□□ -0.5
NKX2-1P43699 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC11.94□□□□□ -0.5
NKX2-1P43699 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
NKX2-1P43699 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
NKX2-1P43699 BRF1-202ENST00000379932 884 ntTSL 5 BASIC11.94□□□□□ -0.5
NKX2-1P43699 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms