Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 MAFG-AS1-202ENST00000583492 969 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
VCANP13611 SDHD-214ENST00000614349 516 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
VCANP13611 CDIPT-AS1-203ENST00000638164 713 ntBASIC14.52□□□□□ -0.08
VCANP13611 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC14.52□□□□□ -0.08
VCANP13611 RXRG-201ENST00000359842 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VCANP13611 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.52□□□□□ -0.08
VCANP13611 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
VCANP13611 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
VCANP13611 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC14.52□□□□□ -0.08
VCANP13611 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC14.52□□□□□ -0.09
VCANP13611 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.52□□□□□ -0.09
VCANP13611 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VCANP13611 ZWINT-202ENST00000361148 807 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
VCANP13611 SYS1-DBNDD2-202ENST00000452133 674 ntAPPRIS ALT2 TSL 3 BASIC14.52□□□□□ -0.09
VCANP13611 OARD1-214ENST00000486443 764 ntTSL 3 BASIC14.52□□□□□ -0.09
VCANP13611 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC14.52□□□□□ -0.09
VCANP13611 OSGIN1-206ENST00000565123 833 ntTSL 2 BASIC14.52□□□□□ -0.09
VCANP13611 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC14.52□□□□□ -0.09
VCANP13611 MIR4309-201ENST00000582498 83 ntBASIC14.52□□□□□ -0.09
VCANP13611 SNRPN-205ENST00000400100 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VCANP13611 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
VCANP13611 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VCANP13611 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VCANP13611 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
VCANP13611 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
VCANP13611 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.52□□□□□ -0.09
VCANP13611 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
VCANP13611 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
VCANP13611 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.51□□□□□ -0.09
VCANP13611 PMM1-201ENST00000216259 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VCANP13611 SFTPA2-202ENST00000372327 815 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VCANP13611 FAM133B-204ENST00000445716 2026 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VCANP13611 AL049840.2-201ENST00000602722 535 ntBASIC14.51□□□□□ -0.09
VCANP13611 MECP2-226ENST00000640414 897 ntTSL 5 BASIC14.51□□□□□ -0.09
VCANP13611 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VCANP13611 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VCANP13611 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VCANP13611 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.51□□□□□ -0.09
VCANP13611 RPS6-201ENST00000315377 863 ntTSL 3 BASIC14.51□□□□□ -0.09
VCANP13611 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
VCANP13611 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
VCANP13611 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
VCANP13611 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
VCANP13611 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
VCANP13611 ATP6V1B1-AS1-201ENST00000422761 1129 ntTSL 2 BASIC14.51□□□□□ -0.09
VCANP13611 GAPDHP65-201ENST00000425487 1006 ntBASIC14.51□□□□□ -0.09
VCANP13611 RFNG-202ENST00000429557 994 ntTSL 5 BASIC14.51□□□□□ -0.09
VCANP13611 AC079742.1-201ENST00000434951 357 ntTSL 3 BASIC14.51□□□□□ -0.09
VCANP13611 PRRX2-AS1-201ENST00000440413 429 ntTSL 2 BASIC14.51□□□□□ -0.09
VCANP13611 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
VCANP13611 AP001979.1-201ENST00000529222 751 ntBASIC14.51□□□□□ -0.09
VCANP13611 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
VCANP13611 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.51□□□□□ -0.09
VCANP13611 MSRB1-205ENST00000564908 550 ntTSL 3 BASIC14.51□□□□□ -0.09
VCANP13611 AC099552.4-201ENST00000624248 949 ntBASIC14.51□□□□□ -0.09
VCANP13611 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC14.51□□□□□ -0.09
VCANP13611 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VCANP13611 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
VCANP13611 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC14.51□□□□□ -0.09
VCANP13611 DHRS12-202ENST00000280056 1324 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VCANP13611 KRT18P45-201ENST00000515347 1333 ntBASIC14.51□□□□□ -0.09
VCANP13611 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VCANP13611 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VCANP13611 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
VCANP13611 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
VCANP13611 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VCANP13611 AL157823.2-201ENST00000452048 669 ntTSL 3 BASIC14.51□□□□□ -0.09
VCANP13611 AC079340.2-201ENST00000504957 495 ntTSL 2 BASIC14.51□□□□□ -0.09
VCANP13611 AC109830.1-203ENST00000506638 467 ntTSL 2 BASIC14.51□□□□□ -0.09
VCANP13611 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VCANP13611 RNA5SP288-201ENST00000516075 93 ntBASIC14.51□□□□□ -0.09
VCANP13611 FOS-205ENST00000555242 629 ntTSL 2 BASIC14.51□□□□□ -0.09
VCANP13611 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC14.51□□□□□ -0.09
VCANP13611 CCND3P2-201ENST00000579393 537 ntBASIC14.51□□□□□ -0.09
VCANP13611 AC008993.3-201ENST00000633603 631 ntTSL 5 BASIC14.51□□□□□ -0.09
VCANP13611 AC116631.1-201ENST00000640685 576 ntTSL 5 BASIC14.51□□□□□ -0.09
VCANP13611 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.51□□□□□ -0.09
VCANP13611 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC14.51□□□□□ -0.09
VCANP13611 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC14.51□□□□□ -0.09
VCANP13611 AC012158.1-201ENST00000535684 1366 ntTSL 2 BASIC14.51□□□□□ -0.09
VCANP13611 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
VCANP13611 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.5□□□□□ -0.09
VCANP13611 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC14.5□□□□□ -0.09
VCANP13611 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
VCANP13611 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
VCANP13611 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VCANP13611 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
VCANP13611 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VCANP13611 REG3A-201ENST00000305165 718 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
VCANP13611 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
VCANP13611 AC010997.2-201ENST00000427610 260 ntTSL 3 BASIC14.5□□□□□ -0.09
VCANP13611 AC138781.1-201ENST00000501322 505 ntTSL 3 BASIC14.5□□□□□ -0.09
VCANP13611 RASGRF2-AS1-202ENST00000505694 535 ntTSL 3 BASIC14.5□□□□□ -0.09
VCANP13611 AC114939.1-201ENST00000520980 514 ntTSL 5 BASIC14.5□□□□□ -0.09
VCANP13611 AC090282.1-201ENST00000572821 534 ntTSL 3 BASIC14.5□□□□□ -0.09
VCANP13611 AL133551.1-201ENST00000610279 1222 ntBASIC14.5□□□□□ -0.09
VCANP13611 AC005906.2-208ENST00000638655 1286 ntTSL 5 BASIC14.5□□□□□ -0.09
VCANP13611 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
VCANP13611 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC14.5□□□□□ -0.09
VCANP13611 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms