Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
SH3RF1Q7Z6J0 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC26.08■■□□□ 1.77
SH3RF1Q7Z6J0 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC26.08■■□□□ 1.77
SH3RF1Q7Z6J0 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC26.08■■□□□ 1.77
SH3RF1Q7Z6J0 AC105265.2-201ENST00000467189 838 ntBASIC26.08■■□□□ 1.77
SH3RF1Q7Z6J0 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC26.08■■□□□ 1.77
SH3RF1Q7Z6J0 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
SH3RF1Q7Z6J0 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
SH3RF1Q7Z6J0 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC26.08■■□□□ 1.77
SH3RF1Q7Z6J0 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
SH3RF1Q7Z6J0 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC26.07■■□□□ 1.76
SH3RF1Q7Z6J0 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC26.07■■□□□ 1.76
SH3RF1Q7Z6J0 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
SH3RF1Q7Z6J0 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC26.06■■□□□ 1.76
SH3RF1Q7Z6J0 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC26.06■■□□□ 1.76
SH3RF1Q7Z6J0 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC26.06■■□□□ 1.76
SH3RF1Q7Z6J0 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC26.06■■□□□ 1.76
SH3RF1Q7Z6J0 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC26.06■■□□□ 1.76
SH3RF1Q7Z6J0 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC26.06■■□□□ 1.76
SH3RF1Q7Z6J0 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC26.06■■□□□ 1.76
SH3RF1Q7Z6J0 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC26.06■■□□□ 1.76
SH3RF1Q7Z6J0 AL355001.2-201ENST00000620617 1191 ntBASIC26.06■■□□□ 1.76
SH3RF1Q7Z6J0 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
SH3RF1Q7Z6J0 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC26.06■■□□□ 1.76
SH3RF1Q7Z6J0 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC26.06■■□□□ 1.76
SH3RF1Q7Z6J0 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
SH3RF1Q7Z6J0 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
SH3RF1Q7Z6J0 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC26.06■■□□□ 1.76
SH3RF1Q7Z6J0 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
SH3RF1Q7Z6J0 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
SH3RF1Q7Z6J0 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
SH3RF1Q7Z6J0 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
SH3RF1Q7Z6J0 EDA-201ENST00000338901 1233 ntBASIC26.05■■□□□ 1.76
SH3RF1Q7Z6J0 ANKRD20A6P-201ENST00000618763 204 ntBASIC26.05■■□□□ 1.76
SH3RF1Q7Z6J0 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
SH3RF1Q7Z6J0 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC26.04■■□□□ 1.76
SH3RF1Q7Z6J0 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC26.04■■□□□ 1.76
SH3RF1Q7Z6J0 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
SH3RF1Q7Z6J0 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC26.04■■□□□ 1.76
SH3RF1Q7Z6J0 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
SH3RF1Q7Z6J0 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC26.04■■□□□ 1.76
SH3RF1Q7Z6J0 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC26.04■■□□□ 1.76
SH3RF1Q7Z6J0 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC26.04■■□□□ 1.76
SH3RF1Q7Z6J0 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
SH3RF1Q7Z6J0 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC26.04■■□□□ 1.76
SH3RF1Q7Z6J0 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
SH3RF1Q7Z6J0 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
SH3RF1Q7Z6J0 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC26.03■■□□□ 1.76
SH3RF1Q7Z6J0 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
SH3RF1Q7Z6J0 AL136967.2-201ENST00000623968 743 ntBASIC26.03■■□□□ 1.76
SH3RF1Q7Z6J0 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
SH3RF1Q7Z6J0 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
SH3RF1Q7Z6J0 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
SH3RF1Q7Z6J0 AC090877.2-201ENST00000558441 1738 ntBASIC26.02■■□□□ 1.76
SH3RF1Q7Z6J0 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC26.02■■□□□ 1.76
SH3RF1Q7Z6J0 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
SH3RF1Q7Z6J0 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC26.02■■□□□ 1.76
SH3RF1Q7Z6J0 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC26.02■■□□□ 1.76
SH3RF1Q7Z6J0 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
SH3RF1Q7Z6J0 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC26.02■■□□□ 1.76
SH3RF1Q7Z6J0 SNX5-217ENST00000606557 1087 ntBASIC26.02■■□□□ 1.76
SH3RF1Q7Z6J0 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC26.02■■□□□ 1.76
SH3RF1Q7Z6J0 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
SH3RF1Q7Z6J0 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
SH3RF1Q7Z6J0 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
SH3RF1Q7Z6J0 ABCB10P4-201ENST00000566803 2184 ntBASIC26.02■■□□□ 1.76
SH3RF1Q7Z6J0 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
SH3RF1Q7Z6J0 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
SH3RF1Q7Z6J0 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC26.01■■□□□ 1.75
SH3RF1Q7Z6J0 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC26.01■■□□□ 1.75
SH3RF1Q7Z6J0 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC26.01■■□□□ 1.75
SH3RF1Q7Z6J0 PARL-206ENST00000435888 1098 ntTSL 5 BASIC26.01■■□□□ 1.75
SH3RF1Q7Z6J0 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC26.01■■□□□ 1.75
SH3RF1Q7Z6J0 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC26.01■■□□□ 1.75
SH3RF1Q7Z6J0 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC26.01■■□□□ 1.75
SH3RF1Q7Z6J0 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC26.01■■□□□ 1.75
SH3RF1Q7Z6J0 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC26■■□□□ 1.75
SH3RF1Q7Z6J0 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
SH3RF1Q7Z6J0 SSSCA1-AS1-201ENST00000567594 614 ntBASIC26■■□□□ 1.75
SH3RF1Q7Z6J0 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
SH3RF1Q7Z6J0 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
SH3RF1Q7Z6J0 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC25.99■■□□□ 1.75
SH3RF1Q7Z6J0 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC25.99■■□□□ 1.75
SH3RF1Q7Z6J0 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC25.99■■□□□ 1.75
SH3RF1Q7Z6J0 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
SH3RF1Q7Z6J0 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC25.99■■□□□ 1.75
SH3RF1Q7Z6J0 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC25.99■■□□□ 1.75
SH3RF1Q7Z6J0 AF213884.3-201ENST00000563833 479 ntBASIC25.99■■□□□ 1.75
SH3RF1Q7Z6J0 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC25.99■■□□□ 1.75
SH3RF1Q7Z6J0 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC25.99■■□□□ 1.75
SH3RF1Q7Z6J0 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC25.99■■□□□ 1.75
SH3RF1Q7Z6J0 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC25.99■■□□□ 1.75
SH3RF1Q7Z6J0 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC25.99■■□□□ 1.75
SH3RF1Q7Z6J0 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
SH3RF1Q7Z6J0 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
SH3RF1Q7Z6J0 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
SH3RF1Q7Z6J0 STOX2-205ENST00000513034 807 ntTSL 3 BASIC25.98■■□□□ 1.75
SH3RF1Q7Z6J0 MIR6722-201ENST00000617286 78 ntBASIC25.98■■□□□ 1.75
SH3RF1Q7Z6J0 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC25.97■■□□□ 1.75
SH3RF1Q7Z6J0 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms