Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
HLA-DQA1P01909 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DQA1P01909 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DQA1P01909 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DQA1P01909 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DQA1P01909 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DQA1P01909 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
HLA-DQA1P01909 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DQA1P01909 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC17.03■□□□□ 0.32
HLA-DQA1P01909 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DQA1P01909 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DQA1P01909 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DQA1P01909 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DQA1P01909 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DQA1P01909 AL359504.2-201ENST00000605506 1601 ntBASIC17.03■□□□□ 0.32
HLA-DQA1P01909 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC17.02■□□□□ 0.32
HLA-DQA1P01909 BID-212ENST00000614949 1988 ntTSL 5 BASIC17.02■□□□□ 0.32
HLA-DQA1P01909 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DQA1P01909 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
HLA-DQA1P01909 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
HLA-DQA1P01909 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DQA1P01909 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DQA1P01909 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DQA1P01909 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DQA1P01909 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DQA1P01909 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DQA1P01909 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DQA1P01909 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DQA1P01909 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DQA1P01909 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC17.02■□□□□ 0.31
HLA-DQA1P01909 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
HLA-DQA1P01909 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC17.02■□□□□ 0.31
HLA-DQA1P01909 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
HLA-DQA1P01909 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HLA-DQA1P01909 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DQA1P01909 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC17.01■□□□□ 0.31
HLA-DQA1P01909 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DQA1P01909 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
HLA-DQA1P01909 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
HLA-DQA1P01909 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DQA1P01909 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DQA1P01909 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DQA1P01909 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DQA1P01909 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DQA1P01909 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DQA1P01909 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DQA1P01909 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC17.01■□□□□ 0.31
HLA-DQA1P01909 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC17.01■□□□□ 0.31
HLA-DQA1P01909 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DQA1P01909 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DQA1P01909 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DQA1P01909 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC17.01■□□□□ 0.31
HLA-DQA1P01909 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
HLA-DQA1P01909 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC17■□□□□ 0.31
HLA-DQA1P01909 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC17■□□□□ 0.31
HLA-DQA1P01909 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DQA1P01909 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DQA1P01909 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC17■□□□□ 0.31
HLA-DQA1P01909 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC17■□□□□ 0.31
HLA-DQA1P01909 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DQA1P01909 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC17■□□□□ 0.31
HLA-DQA1P01909 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DQA1P01909 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DQA1P01909 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
HLA-DQA1P01909 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC17■□□□□ 0.31
HLA-DQA1P01909 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DQA1P01909 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DQA1P01909 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC16.99■□□□□ 0.31
HLA-DQA1P01909 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DQA1P01909 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DQA1P01909 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC16.99■□□□□ 0.31
HLA-DQA1P01909 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DQA1P01909 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HLA-DQA1P01909 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HLA-DQA1P01909 ESRRAP2-201ENST00000418437 1549 ntBASIC16.98■□□□□ 0.31
HLA-DQA1P01909 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC16.98■□□□□ 0.31
HLA-DQA1P01909 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
HLA-DQA1P01909 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
HLA-DQA1P01909 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC16.98■□□□□ 0.31
HLA-DQA1P01909 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC16.98■□□□□ 0.31
HLA-DQA1P01909 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC16.98■□□□□ 0.31
HLA-DQA1P01909 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC16.98■□□□□ 0.31
HLA-DQA1P01909 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
HLA-DQA1P01909 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
HLA-DQA1P01909 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HLA-DQA1P01909 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
HLA-DQA1P01909 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
HLA-DQA1P01909 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HLA-DQA1P01909 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HLA-DQA1P01909 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HLA-DQA1P01909 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
HLA-DQA1P01909 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HLA-DQA1P01909 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
HLA-DQA1P01909 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
HLA-DQA1P01909 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HLA-DQA1P01909 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
HLA-DQA1P01909 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HLA-DQA1P01909 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HLA-DQA1P01909 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
HLA-DQA1P01909 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms