Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
TCRBV7S3A2A0A539 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
TCRBV7S3A2A0A539 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
TCRBV7S3A2A0A539 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
TCRBV7S3A2A0A539 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
TCRBV7S3A2A0A539 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
TCRBV7S3A2A0A539 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC23.13■■□□□ 1.29
TCRBV7S3A2A0A539 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
TCRBV7S3A2A0A539 TSPY13P-201ENST00000338964 914 ntBASIC23.13■■□□□ 1.29
TCRBV7S3A2A0A539 STK32C-205ENST00000456004 607 ntTSL 2 BASIC23.13■■□□□ 1.29
TCRBV7S3A2A0A539 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
TCRBV7S3A2A0A539 C1orf229-201ENST00000623686 2258 ntBASIC23.13■■□□□ 1.29
TCRBV7S3A2A0A539 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
TCRBV7S3A2A0A539 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
TCRBV7S3A2A0A539 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC23.12■■□□□ 1.29
TCRBV7S3A2A0A539 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
TCRBV7S3A2A0A539 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
TCRBV7S3A2A0A539 MIR4281-201ENST00000580852 62 ntBASIC23.12■■□□□ 1.29
TCRBV7S3A2A0A539 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
TCRBV7S3A2A0A539 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
TCRBV7S3A2A0A539 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
TCRBV7S3A2A0A539 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
TCRBV7S3A2A0A539 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
TCRBV7S3A2A0A539 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
TCRBV7S3A2A0A539 GUK1-208ENST00000366728 842 ntTSL 2 BASIC23.11■■□□□ 1.29
TCRBV7S3A2A0A539 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC23.11■■□□□ 1.29
TCRBV7S3A2A0A539 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC23.11■■□□□ 1.29
TCRBV7S3A2A0A539 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC23.11■■□□□ 1.29
TCRBV7S3A2A0A539 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC23.11■■□□□ 1.29
TCRBV7S3A2A0A539 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
TCRBV7S3A2A0A539 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
TCRBV7S3A2A0A539 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC23.1■■□□□ 1.29
TCRBV7S3A2A0A539 KRT18P24-201ENST00000344739 1156 ntBASIC23.1■■□□□ 1.29
TCRBV7S3A2A0A539 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
TCRBV7S3A2A0A539 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
TCRBV7S3A2A0A539 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
TCRBV7S3A2A0A539 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
TCRBV7S3A2A0A539 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC23.1■■□□□ 1.29
TCRBV7S3A2A0A539 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
TCRBV7S3A2A0A539 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
TCRBV7S3A2A0A539 AC079834.2-201ENST00000609776 1949 ntBASIC23.1■■□□□ 1.29
TCRBV7S3A2A0A539 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
TCRBV7S3A2A0A539 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
TCRBV7S3A2A0A539 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
TCRBV7S3A2A0A539 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC23.09■■□□□ 1.29
TCRBV7S3A2A0A539 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
TCRBV7S3A2A0A539 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
TCRBV7S3A2A0A539 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC23.09■■□□□ 1.29
TCRBV7S3A2A0A539 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
TCRBV7S3A2A0A539 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC23.09■■□□□ 1.29
TCRBV7S3A2A0A539 AC074183.2-201ENST00000623112 922 ntBASIC23.09■■□□□ 1.29
TCRBV7S3A2A0A539 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC23.09■■□□□ 1.29
TCRBV7S3A2A0A539 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
TCRBV7S3A2A0A539 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC23.09■■□□□ 1.29
TCRBV7S3A2A0A539 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
TCRBV7S3A2A0A539 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
TCRBV7S3A2A0A539 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC23.08■■□□□ 1.29
TCRBV7S3A2A0A539 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
TCRBV7S3A2A0A539 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
TCRBV7S3A2A0A539 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
TCRBV7S3A2A0A539 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
TCRBV7S3A2A0A539 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
TCRBV7S3A2A0A539 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
TCRBV7S3A2A0A539 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
TCRBV7S3A2A0A539 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
TCRBV7S3A2A0A539 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
TCRBV7S3A2A0A539 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
TCRBV7S3A2A0A539 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
TCRBV7S3A2A0A539 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
TCRBV7S3A2A0A539 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC23.07■■□□□ 1.28
TCRBV7S3A2A0A539 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
TCRBV7S3A2A0A539 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC23.07■■□□□ 1.28
TCRBV7S3A2A0A539 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
TCRBV7S3A2A0A539 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC23.07■■□□□ 1.28
TCRBV7S3A2A0A539 THA1P-201ENST00000590384 1145 ntBASIC23.07■■□□□ 1.28
TCRBV7S3A2A0A539 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC23.07■■□□□ 1.28
TCRBV7S3A2A0A539 AC233723.2-201ENST00000623798 2106 ntBASIC23.07■■□□□ 1.28
TCRBV7S3A2A0A539 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
TCRBV7S3A2A0A539 TERT-206ENST00000508104 2486 ntTSL 5 BASIC23.07■■□□□ 1.28
TCRBV7S3A2A0A539 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.07■■□□□ 1.28
TCRBV7S3A2A0A539 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
TCRBV7S3A2A0A539 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
TCRBV7S3A2A0A539 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
TCRBV7S3A2A0A539 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TCRBV7S3A2A0A539 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TCRBV7S3A2A0A539 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
TCRBV7S3A2A0A539 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
TCRBV7S3A2A0A539 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TCRBV7S3A2A0A539 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC23.06■■□□□ 1.28
TCRBV7S3A2A0A539 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
TCRBV7S3A2A0A539 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
TCRBV7S3A2A0A539 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC23.05■■□□□ 1.28
TCRBV7S3A2A0A539 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC23.05■■□□□ 1.28
TCRBV7S3A2A0A539 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
TCRBV7S3A2A0A539 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC23.05■■□□□ 1.28
TCRBV7S3A2A0A539 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC23.05■■□□□ 1.28
TCRBV7S3A2A0A539 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
TCRBV7S3A2A0A539 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
TCRBV7S3A2A0A539 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
TCRBV7S3A2A0A539 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms