Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXC12P31275 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC12.99□□□□□ -0.33
HOXC12P31275 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXC12P31275 RN7SKP230-201ENST00000365642 335 ntBASIC12.99□□□□□ -0.33
HOXC12P31275 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC12.99□□□□□ -0.33
HOXC12P31275 MPV17-204ENST00000399052 749 ntTSL 4 BASIC12.99□□□□□ -0.33
HOXC12P31275 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HOXC12P31275 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXC12P31275 AL035414.1-201ENST00000451327 857 ntBASIC12.99□□□□□ -0.33
HOXC12P31275 AP003171.2-201ENST00000528208 925 ntBASIC12.99□□□□□ -0.33
HOXC12P31275 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
HOXC12P31275 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXC12P31275 AC100827.2-201ENST00000563214 1194 ntBASIC12.99□□□□□ -0.33
HOXC12P31275 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC12.99□□□□□ -0.33
HOXC12P31275 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC12.99□□□□□ -0.33
HOXC12P31275 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC12.99□□□□□ -0.33
HOXC12P31275 AC008825.2-201ENST00000603374 718 ntBASIC12.99□□□□□ -0.33
HOXC12P31275 AC007663.3-201ENST00000609632 465 ntBASIC12.99□□□□□ -0.33
HOXC12P31275 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HOXC12P31275 AL353726.2-201ENST00000623259 884 ntBASIC12.99□□□□□ -0.33
HOXC12P31275 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXC12P31275 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXC12P31275 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXC12P31275 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXC12P31275 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HOXC12P31275 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXC12P31275 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXC12P31275 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC12.99□□□□□ -0.33
HOXC12P31275 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXC12P31275 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXC12P31275 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC12.99□□□□□ -0.33
HOXC12P31275 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC12.99□□□□□ -0.33
HOXC12P31275 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXC12P31275 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXC12P31275 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC12.99□□□□□ -0.33
HOXC12P31275 AJ011931.1-201ENST00000618749 2492 ntBASIC12.99□□□□□ -0.33
HOXC12P31275 SHC1P1-201ENST00000425230 1745 ntBASIC12.99□□□□□ -0.33
HOXC12P31275 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC12.99□□□□□ -0.33
HOXC12P31275 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXC12P31275 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HOXC12P31275 PAX7-203ENST00000420770 5538 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HOXC12P31275 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC12.99□□□□□ -0.33
HOXC12P31275 ANKRD36-204ENST00000461153 6102 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
HOXC12P31275 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXC12P31275 ANKZF1-202ENST00000409849 2155 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HOXC12P31275 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HOXC12P31275 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC12.98□□□□□ -0.33
HOXC12P31275 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC12.98□□□□□ -0.33
HOXC12P31275 ATE1-208ENST00000540606 5165 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXC12P31275 TXLNA-201ENST00000373609 5012 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXC12P31275 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXC12P31275 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXC12P31275 KREMEN1-202ENST00000400335 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXC12P31275 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC12.98□□□□□ -0.33
HOXC12P31275 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HOXC12P31275 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXC12P31275 MARS-233ENST00000628866 2583 ntTSL 5 BASIC12.98□□□□□ -0.33
HOXC12P31275 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC12.98□□□□□ -0.33
HOXC12P31275 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXC12P31275 LINC02228-204ENST00000642115 2962 ntBASIC12.98□□□□□ -0.33
HOXC12P31275 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXC12P31275 INE2-201ENST00000630399 1874 ntBASIC12.98□□□□□ -0.33
HOXC12P31275 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXC12P31275 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC12.98□□□□□ -0.33
HOXC12P31275 MRPL37P1-201ENST00000592451 1337 ntBASIC12.98□□□□□ -0.33
HOXC12P31275 AC092978.1-202ENST00000637590 1327 ntBASIC12.98□□□□□ -0.33
HOXC12P31275 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXC12P31275 RBM38-204ENST00000371219 760 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXC12P31275 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HOXC12P31275 HNRNPA1P63-201ENST00000427917 963 ntBASIC12.98□□□□□ -0.33
HOXC12P31275 NKAIN1P1-201ENST00000435754 582 ntBASIC12.98□□□□□ -0.33
HOXC12P31275 FAM58BP-201ENST00000439056 645 ntBASIC12.98□□□□□ -0.33
HOXC12P31275 PUDPP3-201ENST00000445368 636 ntBASIC12.98□□□□□ -0.33
HOXC12P31275 SERPINA13P-202ENST00000478994 924 ntBASIC12.98□□□□□ -0.33
HOXC12P31275 ALG3P1-201ENST00000508806 1114 ntBASIC12.98□□□□□ -0.33
HOXC12P31275 GCOM2-201ENST00000509133 1104 ntBASIC12.98□□□□□ -0.33
HOXC12P31275 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXC12P31275 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC12.98□□□□□ -0.33
HOXC12P31275 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HOXC12P31275 AC131206.1-201ENST00000538078 1211 ntBASIC12.98□□□□□ -0.33
HOXC12P31275 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC12.98□□□□□ -0.33
HOXC12P31275 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC12.98□□□□□ -0.33
HOXC12P31275 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXC12P31275 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXC12P31275 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXC12P31275 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HOXC12P31275 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
HOXC12P31275 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC12.98□□□□□ -0.33
HOXC12P31275 GFAP-214ENST00000588735 6538 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXC12P31275 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXC12P31275 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HOXC12P31275 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXC12P31275 CACNA1G-214ENST00000505165 6633 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXC12P31275 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXC12P31275 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXC12P31275 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HOXC12P31275 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXC12P31275 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXC12P31275 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
HOXC12P31275 POM121L4P-202ENST00000427789 1891 ntBASIC12.97□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms