Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SALL4P6-201ENST00000429385 1691 ntBASIC14.5□□□□□ -0.09
COL6A3P12111 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC14.5□□□□□ -0.09
COL6A3P12111 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC14.5□□□□□ -0.09
COL6A3P12111 CSTF3-203ENST00000438862 1132 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL6A3P12111 SNHG21-205ENST00000561107 790 ntTSL 2 BASIC14.5□□□□□ -0.09
COL6A3P12111 ZNF223-202ENST00000585552 541 ntTSL 4 BASIC14.5□□□□□ -0.09
COL6A3P12111 MIR4726-201ENST00000615971 58 ntBASIC14.5□□□□□ -0.09
COL6A3P12111 TEAD1-207ENST00000638666 1281 ntAPPRIS P2 TSL 2 BASIC14.5□□□□□ -0.09
COL6A3P12111 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC14.5□□□□□ -0.09
COL6A3P12111 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL6A3P12111 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL6A3P12111 AC015909.5-201ENST00000624336 2266 ntBASIC14.5□□□□□ -0.09
COL6A3P12111 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.5□□□□□ -0.09
COL6A3P12111 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL6A3P12111 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.5□□□□□ -0.09
COL6A3P12111 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL6A3P12111 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL6A3P12111 AP002414.2-201ENST00000591780 3365 ntBASIC14.5□□□□□ -0.09
COL6A3P12111 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.5□□□□□ -0.09
COL6A3P12111 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
COL6A3P12111 SNAP25-AS1-202ENST00000426491 804 ntTSL 5 BASIC14.5□□□□□ -0.09
COL6A3P12111 MRNIP-216ENST00000521333 410 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
COL6A3P12111 CARS-216ENST00000639317 135 ntTSL 5 BASIC14.5□□□□□ -0.09
COL6A3P12111 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL6A3P12111 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC14.5□□□□□ -0.09
COL6A3P12111 AC092135.3-201ENST00000624151 1846 ntBASIC14.5□□□□□ -0.09
COL6A3P12111 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL6A3P12111 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
COL6A3P12111 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC14.49□□□□□ -0.09
COL6A3P12111 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 AC023509.3-202ENST00000591834 1609 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
COL6A3P12111 SEPT4-223ENST00000583114 1709 ntTSL 2 BASIC14.49□□□□□ -0.09
COL6A3P12111 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
COL6A3P12111 PBDC1-202ENST00000373358 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 C9orf24-202ENST00000379124 648 ntTSL 3 BASIC14.49□□□□□ -0.09
COL6A3P12111 MIR197-201ENST00000384976 75 ntBASIC14.49□□□□□ -0.09
COL6A3P12111 AC007383.2-201ENST00000420509 752 ntTSL 2 BASIC14.49□□□□□ -0.09
COL6A3P12111 CST7-201ENST00000480798 930 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 AL139220.2-222ENST00000627999 756 ntTSL 5 BASIC14.49□□□□□ -0.09
COL6A3P12111 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC14.49□□□□□ -0.09
COL6A3P12111 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
COL6A3P12111 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC14.49□□□□□ -0.09
COL6A3P12111 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
COL6A3P12111 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC14.49□□□□□ -0.09
COL6A3P12111 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.49□□□□□ -0.09
COL6A3P12111 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 KRT18P40-201ENST00000599859 1571 ntBASIC14.49□□□□□ -0.09
COL6A3P12111 SPACA5-201ENST00000304355 648 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 OR6N1-201ENST00000335094 1027 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
COL6A3P12111 MRPL55-213ENST00000366740 644 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
COL6A3P12111 AC096713.1-201ENST00000514650 978 ntBASIC14.49□□□□□ -0.09
COL6A3P12111 RN7SL624P-201ENST00000580297 278 ntBASIC14.49□□□□□ -0.09
COL6A3P12111 AC006273.1-201ENST00000606966 861 ntBASIC14.49□□□□□ -0.09
COL6A3P12111 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
COL6A3P12111 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC14.49□□□□□ -0.09
COL6A3P12111 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 ACE-203ENST00000413513 2237 ntTSL 2 BASIC14.49□□□□□ -0.09
COL6A3P12111 ASMT-203ENST00000381241 1388 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A3P12111 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A3P12111 SRSF10-205ENST00000374452 1194 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A3P12111 GSG1L2-201ENST00000399363 882 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
COL6A3P12111 NOS2P2-201ENST00000426269 867 ntBASIC14.48□□□□□ -0.09
COL6A3P12111 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC14.48□□□□□ -0.09
COL6A3P12111 AC008622.3-201ENST00000621170 600 ntBASIC14.48□□□□□ -0.09
COL6A3P12111 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.48□□□□□ -0.09
COL6A3P12111 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A3P12111 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A3P12111 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC14.48□□□□□ -0.09
COL6A3P12111 WRB-202ENST00000380708 1464 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A3P12111 PUF60-204ENST00000456095 1736 ntTSL 5 BASIC14.48□□□□□ -0.09
COL6A3P12111 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A3P12111 PCDHA1-201ENST00000378133 2726 ntBASIC14.48□□□□□ -0.09
COL6A3P12111 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A3P12111 AL136360.2-201ENST00000502636 581 ntTSL 4 BASIC14.48□□□□□ -0.09
COL6A3P12111 SPATA8-202ENST00000558553 406 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
COL6A3P12111 SMIM17-201ENST00000598409 1076 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
COL6A3P12111 AC013472.3-201ENST00000607407 659 ntBASIC14.48□□□□□ -0.09
COL6A3P12111 MIR941-1-201ENST00000636396 72 ntBASIC14.48□□□□□ -0.09
COL6A3P12111 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A3P12111 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A3P12111 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
COL6A3P12111 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.48□□□□□ -0.09
COL6A3P12111 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC14.48□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms