Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC17.25■□□□□ 0.35
MBD4O95243 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MBD4O95243 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MBD4O95243 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MBD4O95243 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MBD4O95243 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MBD4O95243 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
MBD4O95243 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MBD4O95243 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC17.24■□□□□ 0.35
MBD4O95243 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MBD4O95243 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MBD4O95243 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC17.24■□□□□ 0.35
MBD4O95243 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
MBD4O95243 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MBD4O95243 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
MBD4O95243 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
MBD4O95243 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
MBD4O95243 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MBD4O95243 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MBD4O95243 CCT8L1P-201ENST00000465400 1674 ntBASIC17.24■□□□□ 0.35
MBD4O95243 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MBD4O95243 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
MBD4O95243 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
MBD4O95243 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MBD4O95243 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
MBD4O95243 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MBD4O95243 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
MBD4O95243 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC17.24■□□□□ 0.35
MBD4O95243 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC17.24■□□□□ 0.35
MBD4O95243 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC17.24■□□□□ 0.35
MBD4O95243 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC17.24■□□□□ 0.35
MBD4O95243 RPS9P1-201ENST00000419943 583 ntBASIC17.24■□□□□ 0.35
MBD4O95243 AL353637.1-201ENST00000451571 732 ntBASIC17.24■□□□□ 0.35
MBD4O95243 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC17.24■□□□□ 0.35
MBD4O95243 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC17.24■□□□□ 0.35
MBD4O95243 SUPT4H1P2-201ENST00000501248 353 ntBASIC17.24■□□□□ 0.35
MBD4O95243 CD164-210ENST00000512821 964 ntTSL 2 BASIC17.24■□□□□ 0.35
MBD4O95243 AC134698.3-201ENST00000523880 214 ntBASIC17.24■□□□□ 0.35
MBD4O95243 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC17.24■□□□□ 0.35
MBD4O95243 AC140658.4-201ENST00000561990 352 ntBASIC17.24■□□□□ 0.35
MBD4O95243 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC17.24■□□□□ 0.35
MBD4O95243 HPN-206ENST00000597419 1212 ntTSL 5 BASIC17.24■□□□□ 0.35
MBD4O95243 AC012044.1-201ENST00000603431 297 ntBASIC17.24■□□□□ 0.35
MBD4O95243 AC079336.7-201ENST00000623428 1078 ntBASIC17.24■□□□□ 0.35
MBD4O95243 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
MBD4O95243 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
MBD4O95243 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC17.24■□□□□ 0.35
MBD4O95243 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MBD4O95243 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC17.24■□□□□ 0.35
MBD4O95243 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MBD4O95243 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
MBD4O95243 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC17.24■□□□□ 0.35
MBD4O95243 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
MBD4O95243 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC17.24■□□□□ 0.35
MBD4O95243 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MBD4O95243 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
MBD4O95243 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC17.24■□□□□ 0.35
MBD4O95243 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC17.24■□□□□ 0.35
MBD4O95243 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MBD4O95243 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
MBD4O95243 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
MBD4O95243 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC17.23■□□□□ 0.35
MBD4O95243 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
MBD4O95243 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
MBD4O95243 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MBD4O95243 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MBD4O95243 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
MBD4O95243 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC17.23■□□□□ 0.35
MBD4O95243 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MBD4O95243 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MBD4O95243 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MBD4O95243 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MBD4O95243 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MBD4O95243 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC17.23■□□□□ 0.35
MBD4O95243 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MBD4O95243 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MBD4O95243 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MBD4O95243 MBP-201ENST00000354542 575 ntTSL 2 BASIC17.23■□□□□ 0.35
MBD4O95243 OR2K2-202ENST00000374428 1038 ntBASIC17.23■□□□□ 0.35
MBD4O95243 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MBD4O95243 ELK2AP-201ENST00000392510 1007 ntBASIC17.23■□□□□ 0.35
MBD4O95243 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC17.23■□□□□ 0.35
MBD4O95243 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MBD4O95243 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MBD4O95243 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
MBD4O95243 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MBD4O95243 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC17.23■□□□□ 0.35
MBD4O95243 RN7SL530P-201ENST00000485097 298 ntBASIC17.23■□□□□ 0.35
MBD4O95243 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC17.23■□□□□ 0.35
MBD4O95243 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC17.23■□□□□ 0.35
MBD4O95243 AC093752.3-201ENST00000567343 901 ntBASIC17.23■□□□□ 0.35
MBD4O95243 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC17.23■□□□□ 0.35
MBD4O95243 AL133499.1-201ENST00000596207 608 ntBASIC17.23■□□□□ 0.35
MBD4O95243 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MBD4O95243 MIR6769A-201ENST00000617340 73 ntBASIC17.23■□□□□ 0.35
MBD4O95243 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC17.23■□□□□ 0.35
MBD4O95243 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
MBD4O95243 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MBD4O95243 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MBD4O95243 RDX-218ENST00000544551 4117 ntTSL 2 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms