Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
RHBDD3Q9Y3P4 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC12.81□□□□□ -0.36
RHBDD3Q9Y3P4 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RHBDD3Q9Y3P4 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC12.81□□□□□ -0.36
RHBDD3Q9Y3P4 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
RHBDD3Q9Y3P4 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RHBDD3Q9Y3P4 APP-205ENST00000358918 2366 ntTSL 5 BASIC12.81□□□□□ -0.36
RHBDD3Q9Y3P4 CICP17-201ENST00000418553 2377 ntBASIC12.81□□□□□ -0.36
RHBDD3Q9Y3P4 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
RHBDD3Q9Y3P4 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
RHBDD3Q9Y3P4 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
RHBDD3Q9Y3P4 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RHBDD3Q9Y3P4 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RHBDD3Q9Y3P4 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
RHBDD3Q9Y3P4 CLUHP2-201ENST00000426660 1303 ntBASIC12.81□□□□□ -0.36
RHBDD3Q9Y3P4 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC12.81□□□□□ -0.36
RHBDD3Q9Y3P4 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RHBDD3Q9Y3P4 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RHBDD3Q9Y3P4 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC12.81□□□□□ -0.36
RHBDD3Q9Y3P4 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RHBDD3Q9Y3P4 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
RHBDD3Q9Y3P4 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC12.81□□□□□ -0.36
RHBDD3Q9Y3P4 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RHBDD3Q9Y3P4 MAPT-IT1-201ENST00000624111 3016 ntBASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 RN7SKP230-201ENST00000365642 335 ntBASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 POM121L8P-201ENST00000417732 1281 ntBASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 RPL28-203ENST00000428193 573 ntTSL 2 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 RPL28-204ENST00000431533 590 ntTSL 2 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 PTPA-220ENST00000436883 532 ntTSL 4 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 POM121L9P-203ENST00000441984 1285 ntBASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 AL355864.2-201ENST00000447420 863 ntBASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 AC007389.4-201ENST00000454674 793 ntBASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 RN7SL692P-201ENST00000464677 288 ntBASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 RPL28-207ENST00000558815 616 ntTSL 2 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 RN7SL48P-201ENST00000579283 293 ntBASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 AC020910.5-201ENST00000623668 1865 ntBASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RHBDD3Q9Y3P4 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 AC215219.1-201ENST00000400706 1817 ntBASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RHBDD3Q9Y3P4 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms