Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC13.38□□□□□ -0.27
MSX1P28360 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC13.38□□□□□ -0.27
MSX1P28360 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC13.38□□□□□ -0.27
MSX1P28360 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
MSX1P28360 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.38□□□□□ -0.27
MSX1P28360 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
MSX1P28360 ST20-AS1-201ENST00000560255 4223 ntBASIC13.38□□□□□ -0.27
MSX1P28360 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.38□□□□□ -0.27
MSX1P28360 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
MSX1P28360 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
MSX1P28360 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC13.38□□□□□ -0.27
MSX1P28360 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC13.38□□□□□ -0.27
MSX1P28360 TUBB8P8-201ENST00000458717 1058 ntBASIC13.38□□□□□ -0.27
MSX1P28360 RN7SL769P-201ENST00000469386 295 ntBASIC13.38□□□□□ -0.27
MSX1P28360 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC13.38□□□□□ -0.27
MSX1P28360 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC13.38□□□□□ -0.27
MSX1P28360 AC009884.2-201ENST00000603110 324 ntBASIC13.38□□□□□ -0.27
MSX1P28360 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC13.38□□□□□ -0.27
MSX1P28360 MALAT1-217ENST00000620902 352 ntTSL 3 BASIC13.38□□□□□ -0.27
MSX1P28360 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
MSX1P28360 LINC00552-201ENST00000625151 2579 ntBASIC13.38□□□□□ -0.27
MSX1P28360 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
MSX1P28360 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
MSX1P28360 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC13.38□□□□□ -0.27
MSX1P28360 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.38□□□□□ -0.27
MSX1P28360 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC13.38□□□□□ -0.27
MSX1P28360 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
MSX1P28360 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC13.37□□□□□ -0.27
MSX1P28360 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
MSX1P28360 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
MSX1P28360 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
MSX1P28360 KRT8P19-201ENST00000551916 1455 ntBASIC13.37□□□□□ -0.27
MSX1P28360 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
MSX1P28360 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
MSX1P28360 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.37□□□□□ -0.27
MSX1P28360 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
MSX1P28360 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
MSX1P28360 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
MSX1P28360 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
MSX1P28360 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
MSX1P28360 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
MSX1P28360 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
MSX1P28360 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
MSX1P28360 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
MSX1P28360 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
MSX1P28360 DEF8-202ENST00000418391 852 ntTSL 2 BASIC13.37□□□□□ -0.27
MSX1P28360 KRTAP19-9P-201ENST00000421795 191 ntBASIC13.37□□□□□ -0.27
MSX1P28360 HNRNPA1P63-201ENST00000427917 963 ntBASIC13.37□□□□□ -0.27
MSX1P28360 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
MSX1P28360 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC13.37□□□□□ -0.27
MSX1P28360 SERPINA13P-202ENST00000478994 924 ntBASIC13.37□□□□□ -0.27
MSX1P28360 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC13.37□□□□□ -0.27
MSX1P28360 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC13.37□□□□□ -0.27
MSX1P28360 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC13.37□□□□□ -0.27
MSX1P28360 AC006518.1-201ENST00000541449 943 ntBASIC13.37□□□□□ -0.27
MSX1P28360 RNF41-210ENST00000552244 716 ntTSL 3 BASIC13.37□□□□□ -0.27
MSX1P28360 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC13.37□□□□□ -0.27
MSX1P28360 SORD2P-201ENST00000558556 1069 ntBASIC13.37□□□□□ -0.27
MSX1P28360 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
MSX1P28360 AC107308.1-201ENST00000615897 301 ntBASIC13.37□□□□□ -0.27
MSX1P28360 AL023803.2-201ENST00000620080 638 ntBASIC13.37□□□□□ -0.27
MSX1P28360 GSN-203ENST00000373808 2664 ntTSL 2 BASIC13.37□□□□□ -0.27
MSX1P28360 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC13.37□□□□□ -0.27
MSX1P28360 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC13.37□□□□□ -0.27
MSX1P28360 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
MSX1P28360 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC13.37□□□□□ -0.27
MSX1P28360 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
MSX1P28360 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC13.37□□□□□ -0.27
MSX1P28360 NIN-202ENST00000324330 4364 ntTSL 5 BASIC13.37□□□□□ -0.27
MSX1P28360 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
MSX1P28360 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
MSX1P28360 E2F3P2-201ENST00000447755 1422 ntBASIC13.37□□□□□ -0.27
MSX1P28360 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC13.37□□□□□ -0.27
MSX1P28360 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
MSX1P28360 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.37□□□□□ -0.27
MSX1P28360 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
MSX1P28360 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms