Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 DDC-213ENST00000617822 1809 ntTSL 3 BASIC17.18■□□□□ 0.34
HMGB1P09429 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB1P09429 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC17.18■□□□□ 0.34
HMGB1P09429 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB1P09429 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
HMGB1P09429 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB1P09429 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
HMGB1P09429 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB1P09429 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB1P09429 SBF1P1-201ENST00000444527 5631 ntBASIC17.18■□□□□ 0.34
HMGB1P09429 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB1P09429 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
HMGB1P09429 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB1P09429 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC17.17■□□□□ 0.34
HMGB1P09429 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
HMGB1P09429 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGB1P09429 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB1P09429 AC007614.4-201ENST00000564048 1827 ntBASIC17.17■□□□□ 0.34
HMGB1P09429 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB1P09429 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB1P09429 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB1P09429 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB1P09429 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB1P09429 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
HMGB1P09429 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
HMGB1P09429 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGB1P09429 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
HMGB1P09429 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC17.17■□□□□ 0.34
HMGB1P09429 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB1P09429 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC17.17■□□□□ 0.34
HMGB1P09429 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB1P09429 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC17.17■□□□□ 0.34
HMGB1P09429 ACR-203ENST00000529621 708 ntTSL 5 BASIC17.17■□□□□ 0.34
HMGB1P09429 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC17.17■□□□□ 0.34
HMGB1P09429 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGB1P09429 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB1P09429 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
HMGB1P09429 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC17.17■□□□□ 0.34
HMGB1P09429 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB1P09429 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB1P09429 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
HMGB1P09429 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB1P09429 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGB1P09429 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB1P09429 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB1P09429 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB1P09429 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB1P09429 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
HMGB1P09429 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC17.17■□□□□ 0.34
HMGB1P09429 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB1P09429 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB1P09429 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB1P09429 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB1P09429 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB1P09429 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB1P09429 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB1P09429 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB1P09429 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB1P09429 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB1P09429 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
HMGB1P09429 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB1P09429 AC041040.2-201ENST00000622926 2899 ntBASIC17.16■□□□□ 0.34
HMGB1P09429 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC17.16■□□□□ 0.34
HMGB1P09429 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
HMGB1P09429 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
HMGB1P09429 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB1P09429 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB1P09429 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB1P09429 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGB1P09429 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
HMGB1P09429 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB1P09429 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGB1P09429 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB1P09429 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC17.16■□□□□ 0.34
HMGB1P09429 OLR1-203ENST00000432556 950 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGB1P09429 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB1P09429 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGB1P09429 AC010328.2-201ENST00000597698 1111 ntBASIC17.16■□□□□ 0.34
HMGB1P09429 KLK11-210ENST00000600362 759 ntTSL 3 BASIC17.16■□□□□ 0.34
HMGB1P09429 AC021016.3-201ENST00000608367 477 ntBASIC17.16■□□□□ 0.34
HMGB1P09429 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB1P09429 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGB1P09429 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGB1P09429 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB1P09429 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
HMGB1P09429 C1R-202ENST00000536053 2347 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGB1P09429 LAP3P2-201ENST00000454686 1454 ntBASIC17.16■□□□□ 0.34
HMGB1P09429 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB1P09429 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
HMGB1P09429 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB1P09429 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB1P09429 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB1P09429 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB1P09429 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB1P09429 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB1P09429 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB1P09429 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
HMGB1P09429 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB1P09429 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB1P09429 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms