Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC16.3■□□□□ 0.2
COL20A1Q9P218 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL20A1Q9P218 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL20A1Q9P218 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
COL20A1Q9P218 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL20A1Q9P218 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL20A1Q9P218 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC16.3■□□□□ 0.2
COL20A1Q9P218 AC015802.1-201ENST00000588104 1449 ntBASIC16.3■□□□□ 0.2
COL20A1Q9P218 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC16.3■□□□□ 0.2
COL20A1Q9P218 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL20A1Q9P218 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL20A1Q9P218 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL20A1Q9P218 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC16.3■□□□□ 0.2
COL20A1Q9P218 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL20A1Q9P218 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC16.3■□□□□ 0.2
COL20A1Q9P218 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL20A1Q9P218 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC16.3■□□□□ 0.2
COL20A1Q9P218 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC16.3■□□□□ 0.2
COL20A1Q9P218 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC16.3■□□□□ 0.2
COL20A1Q9P218 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COL20A1Q9P218 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL20A1Q9P218 AC025262.2-201ENST00000623975 1056 ntBASIC16.3■□□□□ 0.2
COL20A1Q9P218 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
COL20A1Q9P218 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL20A1Q9P218 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL20A1Q9P218 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC16.3■□□□□ 0.2
COL20A1Q9P218 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL20A1Q9P218 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.3■□□□□ 0.2
COL20A1Q9P218 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.3■□□□□ 0.2
COL20A1Q9P218 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL20A1Q9P218 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
COL20A1Q9P218 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC16.3■□□□□ 0.2
COL20A1Q9P218 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL20A1Q9P218 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL20A1Q9P218 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL20A1Q9P218 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
COL20A1Q9P218 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL20A1Q9P218 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL20A1Q9P218 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL20A1Q9P218 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL20A1Q9P218 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC16.29■□□□□ 0.2
COL20A1Q9P218 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
COL20A1Q9P218 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.29■□□□□ 0.2
COL20A1Q9P218 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
COL20A1Q9P218 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL20A1Q9P218 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL20A1Q9P218 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL20A1Q9P218 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL20A1Q9P218 HPD-204ENST00000543163 1709 ntTSL 5 BASIC16.29■□□□□ 0.2
COL20A1Q9P218 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
COL20A1Q9P218 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL20A1Q9P218 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC16.29■□□□□ 0.2
COL20A1Q9P218 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC16.29■□□□□ 0.2
COL20A1Q9P218 ORAOV1P1-201ENST00000503108 395 ntBASIC16.29■□□□□ 0.2
COL20A1Q9P218 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC16.29■□□□□ 0.2
COL20A1Q9P218 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC16.29■□□□□ 0.2
COL20A1Q9P218 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
COL20A1Q9P218 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC16.29■□□□□ 0.2
COL20A1Q9P218 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC16.29■□□□□ 0.2
COL20A1Q9P218 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
COL20A1Q9P218 AC009145.4-201ENST00000625119 1294 ntBASIC16.29■□□□□ 0.2
COL20A1Q9P218 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL20A1Q9P218 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
COL20A1Q9P218 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL20A1Q9P218 AL022313.4-201ENST00000562756 2046 ntBASIC16.29■□□□□ 0.2
COL20A1Q9P218 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL20A1Q9P218 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL20A1Q9P218 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL20A1Q9P218 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.29■□□□□ 0.2
COL20A1Q9P218 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL20A1Q9P218 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
COL20A1Q9P218 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL20A1Q9P218 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC16.29■□□□□ 0.2
COL20A1Q9P218 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC16.29■□□□□ 0.2
COL20A1Q9P218 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.29■□□□□ 0.2
COL20A1Q9P218 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL20A1Q9P218 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
COL20A1Q9P218 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
COL20A1Q9P218 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC16.28■□□□□ 0.2
COL20A1Q9P218 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC16.28■□□□□ 0.2
COL20A1Q9P218 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC16.28■□□□□ 0.2
COL20A1Q9P218 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC16.28■□□□□ 0.2
COL20A1Q9P218 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
COL20A1Q9P218 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
COL20A1Q9P218 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL20A1Q9P218 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
COL20A1Q9P218 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC16.28■□□□□ 0.2
COL20A1Q9P218 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC16.28■□□□□ 0.2
COL20A1Q9P218 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms