Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC13.43□□□□□ -0.26
RFC3P40938 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC13.43□□□□□ -0.26
RFC3P40938 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC13.43□□□□□ -0.26
RFC3P40938 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
RFC3P40938 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 AC008132.1-202ENST00000342005 1389 ntBASIC13.43□□□□□ -0.26
RFC3P40938 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 AL136172.1-201ENST00000598590 1394 ntBASIC13.43□□□□□ -0.26
RFC3P40938 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
RFC3P40938 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
RFC3P40938 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RFC3P40938 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RFC3P40938 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
RFC3P40938 SBF1P1-201ENST00000444527 5631 ntBASIC13.42□□□□□ -0.26
RFC3P40938 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RFC3P40938 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RFC3P40938 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
RFC3P40938 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RFC3P40938 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RFC3P40938 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RFC3P40938 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC13.42□□□□□ -0.26
RFC3P40938 AC010327.5-201ENST00000586923 3061 ntBASIC13.42□□□□□ -0.26
RFC3P40938 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RFC3P40938 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC13.42□□□□□ -0.26
RFC3P40938 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RFC3P40938 ABR-205ENST00000544583 5595 ntTSL 2 BASIC13.42□□□□□ -0.26
RFC3P40938 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RFC3P40938 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RFC3P40938 RBM38-204ENST00000371219 760 ntTSL 2 BASIC13.42□□□□□ -0.26
RFC3P40938 HNRNPA1P41-201ENST00000397777 928 ntBASIC13.42□□□□□ -0.26
RFC3P40938 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC13.42□□□□□ -0.26
RFC3P40938 CMC1-204ENST00000423894 549 ntTSL 2 BASIC13.42□□□□□ -0.26
RFC3P40938 PUDPP3-201ENST00000445368 636 ntBASIC13.42□□□□□ -0.26
RFC3P40938 AL133466.1-201ENST00000447582 150 ntBASIC13.42□□□□□ -0.26
RFC3P40938 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC13.42□□□□□ -0.26
RFC3P40938 UPF3AP2-201ENST00000457924 1132 ntBASIC13.42□□□□□ -0.26
RFC3P40938 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC13.42□□□□□ -0.26
RFC3P40938 IMP3P2-201ENST00000489760 475 ntBASIC13.42□□□□□ -0.26
RFC3P40938 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RFC3P40938 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC13.42□□□□□ -0.26
RFC3P40938 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC13.42□□□□□ -0.26
RFC3P40938 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC13.42□□□□□ -0.26
RFC3P40938 CHMP4BP1-201ENST00000556017 588 ntBASIC13.42□□□□□ -0.26
RFC3P40938 AL160314.3-201ENST00000556041 767 ntBASIC13.42□□□□□ -0.26
RFC3P40938 AC105129.2-201ENST00000559536 390 ntBASIC13.42□□□□□ -0.26
RFC3P40938 RPL35-206ENST00000629845 340 ntTSL 5 BASIC13.42□□□□□ -0.26
RFC3P40938 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
RFC3P40938 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RFC3P40938 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RFC3P40938 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RFC3P40938 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RFC3P40938 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC13.42□□□□□ -0.26
RFC3P40938 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC13.42□□□□□ -0.26
RFC3P40938 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
RFC3P40938 MARS-233ENST00000628866 2583 ntTSL 5 BASIC13.42□□□□□ -0.26
RFC3P40938 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC13.42□□□□□ -0.26
RFC3P40938 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RFC3P40938 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC13.42□□□□□ -0.26
RFC3P40938 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RFC3P40938 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC13.42□□□□□ -0.26
RFC3P40938 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RFC3P40938 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RFC3P40938 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RFC3P40938 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RFC3P40938 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.41□□□□□ -0.26
RFC3P40938 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RFC3P40938 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC13.41□□□□□ -0.26
RFC3P40938 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
RFC3P40938 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RFC3P40938 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RFC3P40938 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
RFC3P40938 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RFC3P40938 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
RFC3P40938 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RFC3P40938 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
RFC3P40938 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.41□□□□□ -0.26
RFC3P40938 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC13.41□□□□□ -0.26
RFC3P40938 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
RFC3P40938 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RFC3P40938 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
RFC3P40938 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC13.41□□□□□ -0.26
RFC3P40938 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
RFC3P40938 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RFC3P40938 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RFC3P40938 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
RFC3P40938 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
RFC3P40938 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC13.41□□□□□ -0.26
RFC3P40938 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
RFC3P40938 AC012618.1-201ENST00000461223 412 ntBASIC13.41□□□□□ -0.26
RFC3P40938 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC13.41□□□□□ -0.26
RFC3P40938 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RFC3P40938 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC13.41□□□□□ -0.26
RFC3P40938 RNA5SP423-201ENST00000517127 109 ntBASIC13.41□□□□□ -0.26
RFC3P40938 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
RFC3P40938 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms