Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC16.91■□□□□ 0.3
COL4A5P29400 RN7SL602P-201ENST00000578326 324 ntBASIC16.91■□□□□ 0.3
COL4A5P29400 RN7SL718P-201ENST00000581254 303 ntBASIC16.91■□□□□ 0.3
COL4A5P29400 MIR6074-201ENST00000612054 107 ntBASIC16.91■□□□□ 0.3
COL4A5P29400 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
COL4A5P29400 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC16.91■□□□□ 0.3
COL4A5P29400 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.91■□□□□ 0.3
COL4A5P29400 MTHFR-210ENST00000641407 2387 ntBASIC16.91■□□□□ 0.3
COL4A5P29400 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A5P29400 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A5P29400 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC16.91■□□□□ 0.3
COL4A5P29400 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A5P29400 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A5P29400 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A5P29400 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A5P29400 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A5P29400 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A5P29400 FAM226B-201ENST00000602508 1490 ntBASIC16.91■□□□□ 0.3
COL4A5P29400 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
COL4A5P29400 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A5P29400 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A5P29400 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A5P29400 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A5P29400 AC073347.1-201ENST00000421633 2643 ntBASIC16.91■□□□□ 0.3
COL4A5P29400 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
COL4A5P29400 PES1P2-201ENST00000449745 1735 ntBASIC16.91■□□□□ 0.3
COL4A5P29400 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.91■□□□□ 0.3
COL4A5P29400 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A5P29400 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC16.91■□□□□ 0.3
COL4A5P29400 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A5P29400 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
COL4A5P29400 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC16.91■□□□□ 0.3
COL4A5P29400 AL136084.1-201ENST00000449172 318 ntBASIC16.91■□□□□ 0.3
COL4A5P29400 RHOQP2-201ENST00000449922 579 ntBASIC16.91■□□□□ 0.3
COL4A5P29400 CD44-224ENST00000526669 870 ntTSL 5 BASIC16.91■□□□□ 0.3
COL4A5P29400 AC005993.1-201ENST00000555581 397 ntTSL 5 BASIC16.91■□□□□ 0.3
COL4A5P29400 KRT8P34-201ENST00000577607 1044 ntBASIC16.91■□□□□ 0.3
COL4A5P29400 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC16.91■□□□□ 0.3
COL4A5P29400 AC004466.2-201ENST00000614749 516 ntBASIC16.91■□□□□ 0.3
COL4A5P29400 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A5P29400 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A5P29400 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A5P29400 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.9■□□□□ 0.3
COL4A5P29400 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A5P29400 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.9■□□□□ 0.3
COL4A5P29400 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.9■□□□□ 0.3
COL4A5P29400 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
COL4A5P29400 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC16.9■□□□□ 0.3
COL4A5P29400 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A5P29400 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A5P29400 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A5P29400 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC16.9■□□□□ 0.3
COL4A5P29400 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A5P29400 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC16.9■□□□□ 0.3
COL4A5P29400 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.9■□□□□ 0.3
COL4A5P29400 AL022313.4-201ENST00000562756 2046 ntBASIC16.9■□□□□ 0.3
COL4A5P29400 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A5P29400 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC16.9■□□□□ 0.3
COL4A5P29400 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC16.9■□□□□ 0.3
COL4A5P29400 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC16.9■□□□□ 0.3
COL4A5P29400 GOLGA2P8-201ENST00000505201 779 ntBASIC16.9■□□□□ 0.3
COL4A5P29400 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A5P29400 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC16.9■□□□□ 0.3
COL4A5P29400 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC16.9■□□□□ 0.3
COL4A5P29400 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC16.9■□□□□ 0.3
COL4A5P29400 NEK4P3-201ENST00000604859 544 ntBASIC16.9■□□□□ 0.3
COL4A5P29400 AL357143.1-203ENST00000639750 881 ntBASIC16.9■□□□□ 0.3
COL4A5P29400 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC16.9■□□□□ 0.3
COL4A5P29400 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.9■□□□□ 0.3
COL4A5P29400 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL4A5P29400 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC16.9■□□□□ 0.3
COL4A5P29400 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
COL4A5P29400 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC16.89■□□□□ 0.3
COL4A5P29400 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC16.89■□□□□ 0.29
COL4A5P29400 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A5P29400 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A5P29400 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A5P29400 AL121949.3-201ENST00000406684 385 ntBASIC16.89■□□□□ 0.29
COL4A5P29400 AC098657.1-201ENST00000416270 1135 ntBASIC16.89■□□□□ 0.29
COL4A5P29400 RPL18AP16-201ENST00000424057 531 ntBASIC16.89■□□□□ 0.29
COL4A5P29400 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC16.89■□□□□ 0.29
COL4A5P29400 ZNF677-210ENST00000601413 706 ntTSL 2 BASIC16.89■□□□□ 0.29
COL4A5P29400 AC245369.7-201ENST00000631386 350 ntBASIC16.89■□□□□ 0.29
COL4A5P29400 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC16.89■□□□□ 0.29
COL4A5P29400 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A5P29400 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
COL4A5P29400 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC16.89■□□□□ 0.29
COL4A5P29400 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A5P29400 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A5P29400 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A5P29400 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A5P29400 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A5P29400 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A5P29400 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A5P29400 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC16.88■□□□□ 0.29
COL4A5P29400 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
COL4A5P29400 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL4A5P29400 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC16.88■□□□□ 0.29
COL4A5P29400 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
COL4A5P29400 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms