Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 AL136309.1-201ENST00000403917 691 ntBASIC14.42□□□□□ -0.1
CDH3P22223 NDUFAB1P1-201ENST00000404262 460 ntBASIC14.42□□□□□ -0.1
CDH3P22223 RGS5-214ENST00000429865 754 ntTSL 3 BASIC14.42□□□□□ -0.1
CDH3P22223 GOLGA2P4-201ENST00000441462 777 ntBASIC14.42□□□□□ -0.1
CDH3P22223 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC14.42□□□□□ -0.1
CDH3P22223 AP003171.2-201ENST00000528208 925 ntBASIC14.42□□□□□ -0.1
CDH3P22223 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC14.42□□□□□ -0.1
CDH3P22223 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC14.42□□□□□ -0.1
CDH3P22223 MIR4525-201ENST00000580000 75 ntBASIC14.42□□□□□ -0.1
CDH3P22223 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CDH3P22223 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.42□□□□□ -0.1
CDH3P22223 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.42□□□□□ -0.1
CDH3P22223 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CDH3P22223 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC14.42□□□□□ -0.1
CDH3P22223 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.42□□□□□ -0.1
CDH3P22223 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC14.42□□□□□ -0.1
CDH3P22223 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.42□□□□□ -0.1
CDH3P22223 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CDH3P22223 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
CDH3P22223 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC14.42□□□□□ -0.1
CDH3P22223 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC14.42□□□□□ -0.1
CDH3P22223 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDH3P22223 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.41□□□□□ -0.1
CDH3P22223 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.41□□□□□ -0.1
CDH3P22223 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CDH3P22223 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.41□□□□□ -0.1
CDH3P22223 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
CDH3P22223 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
CDH3P22223 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
CDH3P22223 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC14.41□□□□□ -0.1
CDH3P22223 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 TISP43-201ENST00000409793 538 ntTSL 4 BASIC14.41□□□□□ -0.1
CDH3P22223 AC007969.1-201ENST00000433675 447 ntBASIC14.41□□□□□ -0.1
CDH3P22223 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC14.41□□□□□ -0.1
CDH3P22223 NCK2-206ENST00000522586 490 ntTSL 5 BASIC14.41□□□□□ -0.1
CDH3P22223 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC14.41□□□□□ -0.1
CDH3P22223 KLK3-211ENST00000597483 810 ntTSL 2 BASIC14.41□□□□□ -0.1
CDH3P22223 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC14.41□□□□□ -0.1
CDH3P22223 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.41□□□□□ -0.1
CDH3P22223 AC244157.2-201ENST00000616239 1006 ntBASIC14.41□□□□□ -0.1
CDH3P22223 MIR6869-201ENST00000619434 62 ntBASIC14.41□□□□□ -0.1
CDH3P22223 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC14.41□□□□□ -0.1
CDH3P22223 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.41□□□□□ -0.1
CDH3P22223 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.41□□□□□ -0.1
CDH3P22223 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.41□□□□□ -0.1
CDH3P22223 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
CDH3P22223 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
CDH3P22223 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CDH3P22223 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.41□□□□□ -0.1
CDH3P22223 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC14.41□□□□□ -0.1
CDH3P22223 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDH3P22223 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CDH3P22223 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC14.41□□□□□ -0.1
CDH3P22223 AP000593.2-201ENST00000542775 1433 ntBASIC14.41□□□□□ -0.1
CDH3P22223 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms