Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 AC112504.1-201ENST00000623415 1841 ntBASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 SLC35F2-201ENST00000375682 1076 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 AL357833.1-201ENST00000413993 832 ntTSL 3 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 AL773545.2-201ENST00000442149 472 ntBASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 ALG1L15P-201ENST00000482834 794 ntBASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 AC120498.5-201ENST00000561757 299 ntBASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 CES1P2-201ENST00000566467 1242 ntBASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 DRG2-220ENST00000583355 891 ntTSL 3 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 NF1P11-201ENST00000621292 1282 ntBASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 R3HDM2P2-201ENST00000401880 2116 ntBASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.11■□□□□ 0.33
SMC1BQ8NDV3 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 CYP2T1P-202ENST00000641596 2535 ntBASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 AL591122.2-201ENST00000624125 1853 ntBASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 JTB-202ENST00000356648 1040 ntTSL 2 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 OR10N1P-201ENST00000392758 869 ntBASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 CFL1P6-201ENST00000400899 494 ntBASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 GRPEL2P1-201ENST00000453145 339 ntBASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 TPT1P6-201ENST00000458298 514 ntBASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 AC147876.1-201ENST00000504408 322 ntBASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 CD164-210ENST00000512821 964 ntTSL 2 BASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 AC095040.1-201ENST00000513286 675 ntBASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 RN7SL524P-201ENST00000581152 300 ntBASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 AC005777.1-201ENST00000588332 187 ntBASIC17.1■□□□□ 0.33
SMC1BQ8NDV3 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms