Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGB4Q8WW32 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.63□□□□□ -0.07
HMGB4Q8WW32 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 MIR4649-201ENST00000582839 64 ntBASIC14.63□□□□□ -0.07
HMGB4Q8WW32 RPL17P45-201ENST00000586289 509 ntBASIC14.63□□□□□ -0.07
HMGB4Q8WW32 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 AC025271.4-201ENST00000621477 1726 ntBASIC14.63□□□□□ -0.07
HMGB4Q8WW32 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGB4Q8WW32 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 ACE3P-201ENST00000423435 1973 ntBASIC14.62□□□□□ -0.07
HMGB4Q8WW32 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 KRT8P31-201ENST00000504812 1408 ntBASIC14.62□□□□□ -0.07
HMGB4Q8WW32 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 AC114947.1-202ENST00000514136 344 ntBASIC14.62□□□□□ -0.07
HMGB4Q8WW32 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 AL022334.2-201ENST00000610000 484 ntBASIC14.62□□□□□ -0.07
HMGB4Q8WW32 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 MYO15B-237ENST00000642007 4893 ntBASIC14.62□□□□□ -0.07
HMGB4Q8WW32 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
HMGB4Q8WW32 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms