Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC12.59□□□□□ -0.39
ABCA4P78363 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
ABCA4P78363 TMBIM7P-203ENST00000641617 1718 ntBASIC12.59□□□□□ -0.39
ABCA4P78363 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
ABCA4P78363 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 AL583805.1-201ENST00000391389 531 ntBASIC12.59□□□□□ -0.39
ABCA4P78363 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 HPGD-203ENST00000422112 805 ntTSL 2 BASIC12.59□□□□□ -0.39
ABCA4P78363 RPL8P2-201ENST00000430538 502 ntBASIC12.59□□□□□ -0.39
ABCA4P78363 PTPA-215ENST00000432124 567 ntTSL 4 BASIC12.59□□□□□ -0.39
ABCA4P78363 AL645933.1-201ENST00000440087 609 ntBASIC12.59□□□□□ -0.39
ABCA4P78363 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC12.59□□□□□ -0.39
ABCA4P78363 AL022344.2-201ENST00000568976 968 ntBASIC12.59□□□□□ -0.39
ABCA4P78363 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC12.59□□□□□ -0.39
ABCA4P78363 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC12.59□□□□□ -0.39
ABCA4P78363 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC12.59□□□□□ -0.39
ABCA4P78363 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA4P78363 AC007950.2-201ENST00000615045 2347 ntBASIC12.59□□□□□ -0.39
ABCA4P78363 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC12.59□□□□□ -0.39
ABCA4P78363 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
ABCA4P78363 KHSRPP1-201ENST00000427983 1768 ntBASIC12.58□□□□□ -0.39
ABCA4P78363 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC12.58□□□□□ -0.39
ABCA4P78363 AC020658.6-201ENST00000623564 1870 ntBASIC12.58□□□□□ -0.39
ABCA4P78363 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
ABCA4P78363 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC12.58□□□□□ -0.39
ABCA4P78363 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC12.58□□□□□ -0.39
ABCA4P78363 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.39
ABCA4P78363 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.39
ABCA4P78363 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
ABCA4P78363 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
ABCA4P78363 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC12.58□□□□□ -0.4
ABCA4P78363 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
ABCA4P78363 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
ABCA4P78363 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
ABCA4P78363 SERF2-206ENST00000409291 807 ntTSL 3 BASIC12.58□□□□□ -0.4
ABCA4P78363 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC12.58□□□□□ -0.4
ABCA4P78363 IGHV3-37-201ENST00000518544 340 ntBASIC12.58□□□□□ -0.4
ABCA4P78363 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC12.58□□□□□ -0.4
ABCA4P78363 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
ABCA4P78363 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
ABCA4P78363 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
ABCA4P78363 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
ABCA4P78363 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC12.58□□□□□ -0.4
ABCA4P78363 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
ABCA4P78363 LCK-206ENST00000373564 2137 ntTSL 5 BASIC12.58□□□□□ -0.4
ABCA4P78363 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC12.58□□□□□ -0.4
ABCA4P78363 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
ABCA4P78363 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC12.58□□□□□ -0.4
ABCA4P78363 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
ABCA4P78363 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
ABCA4P78363 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC12.58□□□□□ -0.4
ABCA4P78363 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC12.58□□□□□ -0.4
ABCA4P78363 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
ABCA4P78363 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
ABCA4P78363 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC12.58□□□□□ -0.4
ABCA4P78363 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
ABCA4P78363 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC12.58□□□□□ -0.4
ABCA4P78363 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC12.58□□□□□ -0.4
ABCA4P78363 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
ABCA4P78363 CR383656.3-201ENST00000551315 183 ntBASIC12.58□□□□□ -0.4
ABCA4P78363 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC12.58□□□□□ -0.4
ABCA4P78363 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
ABCA4P78363 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC12.58□□□□□ -0.4
ABCA4P78363 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC12.58□□□□□ -0.4
ABCA4P78363 DDX5-235ENST00000630471 473 ntTSL 4 BASIC12.58□□□□□ -0.4
ABCA4P78363 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC12.58□□□□□ -0.4
ABCA4P78363 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC12.57□□□□□ -0.4
ABCA4P78363 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC12.57□□□□□ -0.4
ABCA4P78363 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC12.57□□□□□ -0.4
ABCA4P78363 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC12.57□□□□□ -0.4
ABCA4P78363 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC12.57□□□□□ -0.4
ABCA4P78363 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC12.57□□□□□ -0.4
ABCA4P78363 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC12.57□□□□□ -0.4
ABCA4P78363 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
ABCA4P78363 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC12.57□□□□□ -0.4
ABCA4P78363 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC12.57□□□□□ -0.4
ABCA4P78363 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC12.57□□□□□ -0.4
ABCA4P78363 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
ABCA4P78363 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC12.57□□□□□ -0.4
ABCA4P78363 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC12.57□□□□□ -0.4
ABCA4P78363 ALG1L6P-201ENST00000515248 758 ntBASIC12.57□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms