Protein–RNA interactions for Protein: O60481

ZIC3, Zinc finger protein ZIC 3, humanhuman

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC3O60481 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ZIC3O60481 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC13.11□□□□□ -0.31
ZIC3O60481 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ZIC3O60481 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
ZIC3O60481 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC13.11□□□□□ -0.31
ZIC3O60481 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC13.11□□□□□ -0.31
ZIC3O60481 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC13.11□□□□□ -0.31
ZIC3O60481 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC13.11□□□□□ -0.31
ZIC3O60481 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC13.11□□□□□ -0.31
ZIC3O60481 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC13.11□□□□□ -0.31
ZIC3O60481 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC13.11□□□□□ -0.31
ZIC3O60481 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC13.11□□□□□ -0.31
ZIC3O60481 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
ZIC3O60481 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC13.11□□□□□ -0.31
ZIC3O60481 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC13.11□□□□□ -0.31
ZIC3O60481 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
ZIC3O60481 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC13.11□□□□□ -0.31
ZIC3O60481 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
ZIC3O60481 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ZIC3O60481 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
ZIC3O60481 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ZIC3O60481 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC13.11□□□□□ -0.31
ZIC3O60481 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
ZIC3O60481 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ZIC3O60481 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC13.11□□□□□ -0.31
ZIC3O60481 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC13.1□□□□□ -0.31
ZIC3O60481 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC13.1□□□□□ -0.31
ZIC3O60481 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC13.1□□□□□ -0.31
ZIC3O60481 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC13.1□□□□□ -0.31
ZIC3O60481 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
ZIC3O60481 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
ZIC3O60481 BX640514.1-201ENST00000583223 1918 ntBASIC13.1□□□□□ -0.31
ZIC3O60481 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC13.1□□□□□ -0.31
ZIC3O60481 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
ZIC3O60481 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 MIR769-201ENST00000390225 118 ntBASIC13.1□□□□□ -0.31
ZIC3O60481 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC13.1□□□□□ -0.31
ZIC3O60481 NME6-203ENST00000415644 849 ntTSL 2 BASIC13.1□□□□□ -0.31
ZIC3O60481 CMC1-204ENST00000423894 549 ntTSL 2 BASIC13.1□□□□□ -0.31
ZIC3O60481 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC13.1□□□□□ -0.31
ZIC3O60481 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC13.1□□□□□ -0.31
ZIC3O60481 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC13.1□□□□□ -0.31
ZIC3O60481 NEU3-202ENST00000526068 431 ntTSL 2 BASIC13.1□□□□□ -0.31
ZIC3O60481 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC13.1□□□□□ -0.31
ZIC3O60481 DRG2-220ENST00000583355 891 ntTSL 3 BASIC13.1□□□□□ -0.31
ZIC3O60481 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC13.1□□□□□ -0.31
ZIC3O60481 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC13.1□□□□□ -0.31
ZIC3O60481 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
ZIC3O60481 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
ZIC3O60481 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC13.1□□□□□ -0.31
ZIC3O60481 AC091544.8-201ENST00000619490 361 ntBASIC13.1□□□□□ -0.31
ZIC3O60481 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
ZIC3O60481 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC13.1□□□□□ -0.31
ZIC3O60481 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC13.1□□□□□ -0.31
ZIC3O60481 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC13.1□□□□□ -0.31
ZIC3O60481 KRT8P21-201ENST00000430398 1491 ntBASIC13.1□□□□□ -0.31
ZIC3O60481 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
ZIC3O60481 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
ZIC3O60481 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC13.1□□□□□ -0.31
ZIC3O60481 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
ZIC3O60481 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
ZIC3O60481 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
ZIC3O60481 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
ZIC3O60481 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
ZIC3O60481 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
ZIC3O60481 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
ZIC3O60481 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
ZIC3O60481 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC13.09□□□□□ -0.31
ZIC3O60481 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC13.09□□□□□ -0.31
ZIC3O60481 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
ZIC3O60481 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
ZIC3O60481 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC13.09□□□□□ -0.31
ZIC3O60481 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
ZIC3O60481 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
ZIC3O60481 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
ZIC3O60481 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms