Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 RPS2P32-201ENST00000439199 892 ntBASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 HSPB1P2-201ENST00000448722 546 ntBASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 AC100827.2-201ENST00000563214 1194 ntBASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 TNN-203ENST00000622870 3719 ntTSL 5 BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCSER1Q9C0I3 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 C1R-201ENST00000535233 2211 ntTSL 2 BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 OS9-207ENST00000439210 1946 ntTSL 2 BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 AC009884.2-201ENST00000603110 324 ntBASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC16.31■□□□□ 0.2
CCSER1Q9C0I3 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 RPSAP36-202ENST00000494591 1261 ntBASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 MFF-223ENST00000524634 647 ntTSL 2 BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 KLK11-210ENST00000600362 759 ntTSL 3 BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms