Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
PDX1P52945 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.25□□□□□ -0.13
PDX1P52945 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.25□□□□□ -0.13
PDX1P52945 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PDX1P52945 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
PDX1P52945 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PDX1P52945 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PDX1P52945 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PDX1P52945 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
PDX1P52945 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PDX1P52945 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PDX1P52945 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDX1P52945 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PDX1P52945 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
PDX1P52945 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.24□□□□□ -0.13
PDX1P52945 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDX1P52945 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDX1P52945 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PDX1P52945 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDX1P52945 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PDX1P52945 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDX1P52945 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC14.24□□□□□ -0.13
PDX1P52945 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC14.24□□□□□ -0.13
PDX1P52945 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDX1P52945 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDX1P52945 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC14.24□□□□□ -0.13
PDX1P52945 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDX1P52945 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDX1P52945 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PDX1P52945 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDX1P52945 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDX1P52945 AC012441.2-201ENST00000444843 739 ntBASIC14.24□□□□□ -0.13
PDX1P52945 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC14.24□□□□□ -0.13
PDX1P52945 SCARNA21-201ENST00000517026 139 ntBASIC14.24□□□□□ -0.13
PDX1P52945 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
PDX1P52945 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PDX1P52945 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.24□□□□□ -0.13
PDX1P52945 MIR7845-201ENST00000618396 99 ntBASIC14.24□□□□□ -0.13
PDX1P52945 RPL35-206ENST00000629845 340 ntTSL 5 BASIC14.24□□□□□ -0.13
PDX1P52945 AC006453.1-201ENST00000636037 1257 ntBASIC14.24□□□□□ -0.13
PDX1P52945 NAP1L6-202ENST00000641404 1222 ntBASIC14.24□□□□□ -0.13
PDX1P52945 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
PDX1P52945 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC14.24□□□□□ -0.13
PDX1P52945 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC14.24□□□□□ -0.13
PDX1P52945 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDX1P52945 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.24□□□□□ -0.13
PDX1P52945 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDX1P52945 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
PDX1P52945 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
PDX1P52945 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
PDX1P52945 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.24□□□□□ -0.13
PDX1P52945 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.24□□□□□ -0.13
PDX1P52945 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDX1P52945 AC003102.2-201ENST00000589195 1469 ntBASIC14.24□□□□□ -0.13
PDX1P52945 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDX1P52945 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.24□□□□□ -0.13
PDX1P52945 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDX1P52945 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDX1P52945 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.24□□□□□ -0.13
PDX1P52945 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
PDX1P52945 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDX1P52945 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
PDX1P52945 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDX1P52945 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC14.23□□□□□ -0.13
PDX1P52945 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDX1P52945 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PDX1P52945 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDX1P52945 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDX1P52945 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDX1P52945 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDX1P52945 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.23□□□□□ -0.13
PDX1P52945 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDX1P52945 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PDX1P52945 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PDX1P52945 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDX1P52945 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.23□□□□□ -0.13
PDX1P52945 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.23□□□□□ -0.13
PDX1P52945 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDX1P52945 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDX1P52945 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDX1P52945 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDX1P52945 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.23□□□□□ -0.13
PDX1P52945 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
PDX1P52945 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC14.23□□□□□ -0.13
PDX1P52945 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDX1P52945 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDX1P52945 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDX1P52945 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
PDX1P52945 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC14.23□□□□□ -0.13
PDX1P52945 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC14.23□□□□□ -0.13
PDX1P52945 AC019193.1-201ENST00000506678 823 ntBASIC14.23□□□□□ -0.13
PDX1P52945 LY6E-208ENST00000520531 490 ntTSL 2 BASIC14.23□□□□□ -0.13
PDX1P52945 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC14.23□□□□□ -0.13
PDX1P52945 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC14.23□□□□□ -0.13
PDX1P52945 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PDX1P52945 MIR3147-201ENST00000577811 66 ntBASIC14.23□□□□□ -0.13
PDX1P52945 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC14.23□□□□□ -0.13
PDX1P52945 AC005962.1-201ENST00000584100 773 ntBASIC14.23□□□□□ -0.13
PDX1P52945 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
PDX1P52945 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms