Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC13.9□□□□□ -0.18
CLK1P49759 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC13.9□□□□□ -0.18
CLK1P49759 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLK1P49759 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CLK1P49759 USP4-203ENST00000415188 1454 ntTSL 3 BASIC13.9□□□□□ -0.18
CLK1P49759 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC13.9□□□□□ -0.18
CLK1P49759 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC13.9□□□□□ -0.18
CLK1P49759 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC13.9□□□□□ -0.18
CLK1P49759 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLK1P49759 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLK1P49759 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC13.9□□□□□ -0.18
CLK1P49759 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC13.9□□□□□ -0.18
CLK1P49759 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
CLK1P49759 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC13.9□□□□□ -0.18
CLK1P49759 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC13.9□□□□□ -0.18
CLK1P49759 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLK1P49759 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CLK1P49759 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
CLK1P49759 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
CLK1P49759 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CLK1P49759 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLK1P49759 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLK1P49759 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC13.9□□□□□ -0.18
CLK1P49759 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
CLK1P49759 AMT-232ENST00000636199 1546 ntTSL 5 BASIC13.9□□□□□ -0.19
CLK1P49759 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC13.9□□□□□ -0.19
CLK1P49759 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
CLK1P49759 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
CLK1P49759 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLK1P49759 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLK1P49759 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLK1P49759 AC018442.1-201ENST00000421439 2061 ntBASIC13.89□□□□□ -0.19
CLK1P49759 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
CLK1P49759 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLK1P49759 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC13.89□□□□□ -0.19
CLK1P49759 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLK1P49759 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
CLK1P49759 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
CLK1P49759 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC13.89□□□□□ -0.19
CLK1P49759 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC13.89□□□□□ -0.19
CLK1P49759 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLK1P49759 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLK1P49759 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLK1P49759 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLK1P49759 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLK1P49759 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC13.89□□□□□ -0.19
CLK1P49759 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLK1P49759 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLK1P49759 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLK1P49759 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
CLK1P49759 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC13.89□□□□□ -0.19
CLK1P49759 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLK1P49759 WDR53-203ENST00000429115 683 ntTSL 2 BASIC13.89□□□□□ -0.19
CLK1P49759 MYCLP2-201ENST00000449268 967 ntBASIC13.89□□□□□ -0.19
CLK1P49759 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC13.89□□□□□ -0.19
CLK1P49759 ENPP7P5-201ENST00000541031 1031 ntBASIC13.89□□□□□ -0.19
CLK1P49759 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC13.89□□□□□ -0.19
CLK1P49759 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC13.89□□□□□ -0.19
CLK1P49759 COX11-202ENST00000571584 1108 ntTSL 2 BASIC13.89□□□□□ -0.19
CLK1P49759 AC140912.1-201ENST00000577171 1054 ntBASIC13.89□□□□□ -0.19
CLK1P49759 AC027307.3-201ENST00000594262 1100 ntBASIC13.89□□□□□ -0.19
CLK1P49759 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CLK1P49759 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLK1P49759 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC13.89□□□□□ -0.19
CLK1P49759 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC13.89□□□□□ -0.19
CLK1P49759 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
CLK1P49759 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLK1P49759 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC13.89□□□□□ -0.19
CLK1P49759 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLK1P49759 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
CLK1P49759 MYO15B-236ENST00000633867 6323 ntTSL 5 BASIC13.89□□□□□ -0.19
CLK1P49759 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLK1P49759 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC13.89□□□□□ -0.19
CLK1P49759 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.89□□□□□ -0.19
CLK1P49759 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
CLK1P49759 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLK1P49759 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC13.89□□□□□ -0.19
CLK1P49759 PAQR3-209ENST00000512733 9811 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLK1P49759 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC13.89□□□□□ -0.19
CLK1P49759 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC13.89□□□□□ -0.19
CLK1P49759 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLK1P49759 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
CLK1P49759 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
CLK1P49759 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLK1P49759 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC13.88□□□□□ -0.19
CLK1P49759 AL138799.1-201ENST00000448213 1675 ntBASIC13.88□□□□□ -0.19
CLK1P49759 AP000845.1-201ENST00000581677 2131 ntBASIC13.88□□□□□ -0.19
CLK1P49759 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC13.88□□□□□ -0.19
CLK1P49759 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 INTS4P2-202ENST00000614726 2019 ntBASIC13.88□□□□□ -0.19
CLK1P49759 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC13.88□□□□□ -0.19
CLK1P49759 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 138.1 ms