Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC14.8□□□□□ -0.04
PTPN4P29074 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
PTPN4P29074 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
PTPN4P29074 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC14.8□□□□□ -0.04
PTPN4P29074 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
PTPN4P29074 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC14.8□□□□□ -0.04
PTPN4P29074 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 KRT18P64-201ENST00000434946 1219 ntBASIC14.8□□□□□ -0.04
PTPN4P29074 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.8□□□□□ -0.04
PTPN4P29074 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.8□□□□□ -0.04
PTPN4P29074 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.8□□□□□ -0.04
PTPN4P29074 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.8□□□□□ -0.04
PTPN4P29074 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
PTPN4P29074 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC14.8□□□□□ -0.04
PTPN4P29074 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.8□□□□□ -0.04
PTPN4P29074 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC14.8□□□□□ -0.04
PTPN4P29074 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.8□□□□□ -0.04
PTPN4P29074 TDH-203ENST00000531764 1110 ntBASIC14.8□□□□□ -0.04
PTPN4P29074 SNX29P1-201ENST00000548357 1007 ntBASIC14.8□□□□□ -0.04
PTPN4P29074 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.8□□□□□ -0.04
PTPN4P29074 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC14.8□□□□□ -0.04
PTPN4P29074 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.8□□□□□ -0.04
PTPN4P29074 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.8□□□□□ -0.04
PTPN4P29074 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.8□□□□□ -0.04
PTPN4P29074 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
PTPN4P29074 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC14.8□□□□□ -0.04
PTPN4P29074 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.8□□□□□ -0.04
PTPN4P29074 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
PTPN4P29074 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC14.8□□□□□ -0.04
PTPN4P29074 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
PTPN4P29074 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
PTPN4P29074 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
PTPN4P29074 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.8□□□□□ -0.04
PTPN4P29074 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC14.8□□□□□ -0.04
PTPN4P29074 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN4P29074 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
PTPN4P29074 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN4P29074 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN4P29074 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN4P29074 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN4P29074 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN4P29074 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN4P29074 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN4P29074 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN4P29074 LBX2-201ENST00000341396 886 ntTSL 3 BASIC14.79□□□□□ -0.04
PTPN4P29074 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN4P29074 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN4P29074 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN4P29074 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
PTPN4P29074 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
PTPN4P29074 AC104457.1-201ENST00000401024 814 ntBASIC14.79□□□□□ -0.04
PTPN4P29074 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.79□□□□□ -0.04
PTPN4P29074 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.79□□□□□ -0.04
PTPN4P29074 SOCS2P1-201ENST00000417727 557 ntBASIC14.79□□□□□ -0.04
PTPN4P29074 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC14.79□□□□□ -0.04
PTPN4P29074 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC14.79□□□□□ -0.04
PTPN4P29074 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.79□□□□□ -0.04
PTPN4P29074 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC14.79□□□□□ -0.04
PTPN4P29074 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.79□□□□□ -0.04
PTPN4P29074 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC14.79□□□□□ -0.04
PTPN4P29074 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.79□□□□□ -0.04
PTPN4P29074 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
PTPN4P29074 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14.79□□□□□ -0.04
PTPN4P29074 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC14.79□□□□□ -0.04
PTPN4P29074 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN4P29074 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC14.79□□□□□ -0.04
PTPN4P29074 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
PTPN4P29074 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.79□□□□□ -0.04
PTPN4P29074 AL022328.1-201ENST00000610050 478 ntBASIC14.79□□□□□ -0.04
PTPN4P29074 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.79□□□□□ -0.04
PTPN4P29074 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN4P29074 INTS4P2-202ENST00000614726 2019 ntBASIC14.79□□□□□ -0.04
PTPN4P29074 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC14.79□□□□□ -0.04
PTPN4P29074 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
PTPN4P29074 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms