Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.573e-7■□□□□ 8.9
YBX3P16989 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.553e-7■□□□□ 8.9
YBX3P16989 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.53e-7■□□□□ 8.9
YBX3P16989 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.423e-7■□□□□ 8.9
YBX3P16989 DAG1-218ENST00000515359 5576 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.373e-7■□□□□ 8.9
YBX3P16989 RANBP1-213ENST00000486575 2177 ntTSL 222.06■■□□□ 1.123e-33■□□□□ 8.9
YBX3P16989 RANBP1-211ENST00000448394 688 ntTSL 218.62■□□□□ 0.573e-33■□□□□ 8.9
YBX3P16989 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.726e-47■□□□□ 8.9
YBX3P16989 RPL18A-202ENST00000597648 683 ntTSL 319.01■□□□□ 0.636e-47■□□□□ 8.9
YBX3P16989 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC17.95■□□□□ 0.466e-47■□□□□ 8.9
YBX3P16989 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC17.65■□□□□ 0.426e-47■□□□□ 8.9
YBX3P16989 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC17.37■□□□□ 0.376e-47■□□□□ 8.9
YBX3P16989 TNPO1-211ENST00000518279 563 ntTSL 423.5■■□□□ 1.359e-7■□□□□ 8.9
YBX3P16989 TNPO1-210ENST00000515483 549 ntTSL 421.48■■□□□ 1.039e-7■□□□□ 8.9
YBX3P16989 TNPO1-209ENST00000513944 569 ntTSL 47.54□□□□□ -1.29e-7■□□□□ 8.9
YBX3P16989 TNPO1-208ENST00000511754 433 ntTSL 57.29□□□□□ -1.249e-7■□□□□ 8.9
YBX3P16989 TNPO1-207ENST00000509030 490 ntTSL 56.38□□□□□ -1.399e-7■□□□□ 8.9
YBX3P16989 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.473e-14■□□□□ 8.9
YBX3P16989 CHCHD1-202ENST00000372837 1202 ntTSL 2 BASIC17.22■□□□□ 0.353e-14■□□□□ 8.9
YBX3P16989 YES1-202ENST00000577611 568 ntTSL 427.07■■□□□ 1.922e-14■□□□□ 8.9
YBX3P16989 ETFA-201ENST00000267950 1289 ntTSL 527.19■■□□□ 1.942e-8■□□□□ 8.9
YBX3P16989 ETFA-215ENST00000560595 917 ntTSL 1 (best)26.22■■□□□ 1.792e-8■□□□□ 8.9
YBX3P16989 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC24.8■■□□□ 1.562e-8■□□□□ 8.9
YBX3P16989 ETFA-216ENST00000560726 942 ntTSL 3 BASIC24.52■■□□□ 1.522e-8■□□□□ 8.9
YBX3P16989 ETFA-208ENST00000559602 792 ntTSL 3 BASIC22.38■■□□□ 1.172e-8■□□□□ 8.9
YBX3P16989 ETFA-218ENST00000560899 910 ntTSL 522.38■■□□□ 1.172e-8■□□□□ 8.9
YBX3P16989 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.462e-8■□□□□ 8.9
YBX3P16989 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.088e-9■□□□□ 8.9
YBX3P16989 SEC31A-234ENST00000512664 710 ntTSL 37.74□□□□□ -1.176e-10■□□□□ 8.9
YBX3P16989 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC7.06□□□□□ -1.286e-10■□□□□ 8.9
YBX3P16989 SEC31A-224ENST00000507828 1329 ntTSL 56.53□□□□□ -1.366e-10■□□□□ 8.9
YBX3P16989 UBE2E1-207ENST00000475680 1138 ntTSL 529.92■■■□□ 2.381e-7■□□□□ 8.9
YBX3P16989 UBE2E1-203ENST00000424381 1224 ntTSL 2 BASIC11.49□□□□□ -0.571e-7■□□□□ 8.9
YBX3P16989 UBE2E1-205ENST00000452012 1166 ntTSL 38.12□□□□□ -1.111e-7■□□□□ 8.9
YBX3P16989 TMEM59-208ENST00000452421 1074 ntTSL 523.56■■□□□ 1.362e-7■□□□□ 8.9
YBX3P16989 TMEM59-201ENST00000234831 6691 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.442e-7■□□□□ 8.9
YBX3P16989 TMEM59-203ENST00000371341 1116 ntTSL 2 BASIC11.86□□□□□ -0.512e-7■□□□□ 8.9
YBX3P16989 TMEM59-204ENST00000371344 2473 ntTSL 2 BASIC8.55□□□□□ -1.042e-7■□□□□ 8.9
YBX3P16989 TMEM59-206ENST00000420738 728 ntTSL 37.31□□□□□ -1.242e-7■□□□□ 8.9
YBX3P16989 TMEM59-207ENST00000440019 618 ntTSL 27.31□□□□□ -1.242e-7■□□□□ 8.9
YBX3P16989 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC4.95□□□□□ -1.622e-7■□□□□ 8.9
YBX3P16989 CDK2-207ENST00000555357 1367 ntTSL 517.28■□□□□ 0.362e-8■□□□□ 8.9
YBX3P16989 ELL2-206ENST00000513343 582 ntTSL 329.42■■■□□ 2.31e-7■□□□□ 8.9
YBX3P16989 ELL2-203ENST00000506628 520 ntTSL 526.35■■□□□ 1.811e-7■□□□□ 8.9
YBX3P16989 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.441e-7■□□□□ 8.9
YBX3P16989 SNRNP200-207ENST00000493271 585 ntTSL 315.38■□□□□ 0.051e-7■□□□□ 8.9
YBX3P16989 ELL2-208ENST00000635633 467 ntTSL 310.31□□□□□ -0.761e-7■□□□□ 8.9
YBX3P16989 ELL2-204ENST00000508694 743 ntTSL 57.34□□□□□ -1.231e-7■□□□□ 8.9
YBX3P16989 MVD-212ENST00000565842 285 ntTSL 332.37■■■□□ 2.771e-8■□□□□ 8.9
YBX3P16989 MVD-204ENST00000562741 217 ntTSL 229.33■■■□□ 2.291e-8■□□□□ 8.9
YBX3P16989 BUD23-217ENST00000487006 631 ntTSL 327.84■■■□□ 2.051e-8■□□□□ 8.9
YBX3P16989 BUD23-202ENST00000421304 538 ntTSL 427.67■■■□□ 2.021e-8■□□□□ 8.9
YBX3P16989 BUD23-210ENST00000441822 632 ntTSL 327.12■■□□□ 1.931e-8■□□□□ 8.9
YBX3P16989 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.548e-11■□□□□ 8.9
YBX3P16989 BUD23-214ENST00000464615 458 ntTSL 524.29■■□□□ 1.481e-8■□□□□ 8.9
YBX3P16989 BUD23-216ENST00000478670 572 ntTSL 424.09■■□□□ 1.451e-8■□□□□ 8.9
YBX3P16989 PLD3-211ENST00000485448 1308 ntTSL 1 (best)22.5■■□□□ 1.191e-8■□□□□ 8.9
YBX3P16989 MVD-207ENST00000563463 543 ntTSL 322.39■■□□□ 1.171e-8■□□□□ 8.9
YBX3P16989 PLD3-203ENST00000392032 873 ntTSL 520.64■□□□□ 0.891e-8■□□□□ 8.9
YBX3P16989 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.831e-8■□□□□ 8.9
YBX3P16989 PLD3-202ENST00000359274 745 ntTSL 319.25■□□□□ 0.671e-8■□□□□ 8.9
YBX3P16989 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.431e-8■□□□□ 8.9
YBX3P16989 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.171e-8■□□□□ 8.9
YBX3P16989 IL10RB-206ENST00000609556 1341 ntTSL 513.75□□□□□ -0.211e-8■□□□□ 8.9
YBX3P16989 IL10RB-204ENST00000493295 1991 ntTSL 213.05□□□□□ -0.321e-8■□□□□ 8.9
YBX3P16989 MFN2-205ENST00000490079 445 ntTSL 212.66□□□□□ -0.381e-8■□□□□ 8.9
YBX3P16989 IL10RB-203ENST00000451065 898 ntTSL 311.59□□□□□ -0.551e-8■□□□□ 8.9
YBX3P16989 NUP98-206ENST00000397013 939 ntTSL 511.4□□□□□ -0.581e-8■□□□□ 8.9
YBX3P16989 NUP98-214ENST00000527104 705 ntTSL 310.73□□□□□ -0.691e-8■□□□□ 8.9
YBX3P16989 GNL2-202ENST00000462812 2409 ntTSL 27.81□□□□□ -1.161e-8■□□□□ 8.9
YBX3P16989 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC7.28□□□□□ -1.241e-8■□□□□ 8.9
YBX3P16989 NUP98-216ENST00000529379 536 ntTSL 37.03□□□□□ -1.281e-8■□□□□ 8.9
YBX3P16989 IL10RB-207ENST00000637650 2132 ntTSL 56.49□□□□□ -1.371e-8■□□□□ 8.9
YBX3P16989 FAM208A-203ENST00000459993 5099 ntTSL 1 (best)4.91□□□□□ -1.621e-8■□□□□ 8.9
YBX3P16989 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.68□□□□□ -1.821e-8■□□□□ 8.9
YBX3P16989 C20orf24-205ENST00000491113 734 ntTSL 233.49■■■□□ 2.954e-8■□□□□ 8.9
YBX3P16989 RPL9-206ENST00000504470 689 ntTSL 218.32■□□□□ 0.528e-30■□□□□ 8.9
YBX3P16989 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.58e-30■□□□□ 8.9
YBX3P16989 RPL9-211ENST00000514842 2153 ntTSL 512.09□□□□□ -0.478e-30■□□□□ 8.9
YBX3P16989 RPL9-205ENST00000503277 769 ntTSL 29.64□□□□□ -0.878e-30■□□□□ 8.9
YBX3P16989 RPL9-207ENST00000506581 371 ntTSL 58.46□□□□□ -1.068e-30■□□□□ 8.9
YBX3P16989 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.338e-30■□□□□ 8.9
YBX3P16989 RPL9-204ENST00000503040 571 ntTSL 46.22□□□□□ -1.418e-30■□□□□ 8.9
YBX3P16989 RPL9-208ENST00000508595 667 ntTSL 36.02□□□□□ -1.458e-30■□□□□ 8.9
YBX3P16989 RPL9-210ENST00000511643 618 ntTSL 25.48□□□□□ -1.538e-30■□□□□ 8.9
YBX3P16989 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC24.65■■□□□ 1.541e-8■□□□□ 8.9
YBX3P16989 ACSF3-211ENST00000540697 829 ntTSL 224.59■■□□□ 1.531e-8■□□□□ 8.9
YBX3P16989 ACSF3-208ENST00000537290 869 ntTSL 521.98■■□□□ 1.111e-8■□□□□ 8.9
YBX3P16989 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC21.55■■□□□ 1.041e-8■□□□□ 8.9
YBX3P16989 DDX39B-206ENST00000419338 928 ntTSL 519.86■□□□□ 0.771e-8■□□□□ 8.9
YBX3P16989 RRM2-206ENST00000474701 1060 ntTSL 218.54■□□□□ 0.561e-8■□□□□ 8.9
YBX3P16989 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.551e-8■□□□□ 8.9
YBX3P16989 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.541e-8■□□□□ 8.9
YBX3P16989 DDX39B-208ENST00000428098 817 ntTSL 317.72■□□□□ 0.431e-8■□□□□ 8.9
YBX3P16989 DDX39B-212ENST00000456662 932 ntTSL 517.72■□□□□ 0.431e-8■□□□□ 8.9
YBX3P16989 ACSF3-213ENST00000542688 2024 ntTSL 517.52■□□□□ 0.391e-8■□□□□ 8.9
YBX3P16989 DDX39B-210ENST00000431908 914 ntTSL 516.2■□□□□ 0.181e-8■□□□□ 8.9
YBX3P16989 DDX39B-201ENST00000376177 1529 ntTSL 5 BASIC15.95■□□□□ 0.141e-8■□□□□ 8.9
YBX3P16989 STMN1-206ENST00000455785 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.141e-8■□□□□ 8.9
YBX3P16989 CCNK-202ENST00000553636 546 ntTSL 215.43■□□□□ 0.061e-8■□□□□ 8.9
Retrieved 100 of 29,075 protein–RNA pairs in 548.9 ms