Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 PPP1R12A-201ENST00000261207 5582 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 TRPM2-203ENST00000397928 6221 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 MYADML-201ENST00000474610 2147 ntBASIC11.08□□□□□ -0.64
HLA-DQA1P01909 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 AL133267.1-201ENST00000398220 340 ntBASIC11.08□□□□□ -0.64
HLA-DQA1P01909 LBH-204ENST00000406087 559 ntTSL 4 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 FALEC-201ENST00000416894 566 ntTSL 3 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 KRT18P58-201ENST00000527480 1120 ntBASIC11.08□□□□□ -0.64
HLA-DQA1P01909 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 FAM197Y3-203ENST00000618346 717 ntBASIC11.08□□□□□ -0.64
HLA-DQA1P01909 NME4-212ENST00000621774 904 ntTSL 3 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 AC010336.1-201ENST00000539278 4739 ntBASIC11.08□□□□□ -0.64
HLA-DQA1P01909 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 SMPDL3B-206ENST00000549094 1611 ntTSL 5 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 HSPA8P5-201ENST00000456928 2069 ntBASIC11.08□□□□□ -0.64
HLA-DQA1P01909 RAB42-201ENST00000373826 1950 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 STARD8-203ENST00000374599 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 PCCB-210ENST00000471595 6090 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 BDH1-202ENST00000392378 3455 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 RFFL-201ENST00000315249 7293 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 CXCR5-201ENST00000292174 4431 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 GRAMD4-201ENST00000361034 4315 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 NEXN-201ENST00000330010 3195 ntTSL 2 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 BAIAP3-203ENST00000421665 3875 ntTSL 2 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DQA1P01909 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 TNRC18P1-201ENST00000502875 3650 ntBASIC11.07□□□□□ -0.64
HLA-DQA1P01909 AL157996.1-201ENST00000624684 2299 ntBASIC11.07□□□□□ -0.64
HLA-DQA1P01909 TMC5-204ENST00000541464 3581 ntTSL 2 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 GFAP-214ENST00000588735 6538 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 CNTNAP5-202ENST00000431078 5284 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 FN1-201ENST00000323926 8708 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 FAM122B-203ENST00000370790 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 AP001972.5-201ENST00000624624 2338 ntBASIC11.07□□□□□ -0.64
HLA-DQA1P01909 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 GSN-209ENST00000449733 2702 ntTSL 2 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 AC140658.5-201ENST00000438532 169 ntBASIC11.07□□□□□ -0.64
HLA-DQA1P01909 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC11.07□□□□□ -0.64
HLA-DQA1P01909 POLD2P1-201ENST00000511220 997 ntBASIC11.07□□□□□ -0.64
HLA-DQA1P01909 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms