Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC23.3■■□□□ 1.32
IFT140Q96RY7 RNF181-203ENST00000441634 844 ntAPPRIS ALT1 TSL 2 BASIC23.3■■□□□ 1.32
IFT140Q96RY7 GLT8D2-204ENST00000547583 862 ntTSL 5 BASIC23.3■■□□□ 1.32
IFT140Q96RY7 SNX20-205ENST00000610485 557 ntTSL 5 BASIC23.3■■□□□ 1.32
IFT140Q96RY7 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
IFT140Q96RY7 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC23.29■■□□□ 1.32
IFT140Q96RY7 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC23.29■■□□□ 1.32
IFT140Q96RY7 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
IFT140Q96RY7 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
IFT140Q96RY7 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
IFT140Q96RY7 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
IFT140Q96RY7 BLVRA-201ENST00000265523 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
IFT140Q96RY7 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
IFT140Q96RY7 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC23.29■■□□□ 1.32
IFT140Q96RY7 THYN1-203ENST00000392594 943 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
IFT140Q96RY7 RPSAP69-201ENST00000445739 546 ntTSL 4 BASIC23.29■■□□□ 1.32
IFT140Q96RY7 RN7SL838P-201ENST00000481676 295 ntBASIC23.29■■□□□ 1.32
IFT140Q96RY7 SNRPF-205ENST00000553192 552 ntTSL 4 BASIC23.29■■□□□ 1.32
IFT140Q96RY7 IDH3A-213ENST00000559205 566 ntTSL 4 BASIC23.29■■□□□ 1.32
IFT140Q96RY7 AL031710.1-201ENST00000570022 468 ntTSL 2 BASIC23.29■■□□□ 1.32
IFT140Q96RY7 MIR5091-201ENST00000578707 93 ntBASIC23.29■■□□□ 1.32
IFT140Q96RY7 MX1-218ENST00000619682 1980 ntTSL 5 BASIC23.29■■□□□ 1.32
IFT140Q96RY7 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
IFT140Q96RY7 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
IFT140Q96RY7 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC23.29■■□□□ 1.32
IFT140Q96RY7 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
IFT140Q96RY7 AC103702.1-201ENST00000548801 2630 ntBASIC23.29■■□□□ 1.32
IFT140Q96RY7 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
IFT140Q96RY7 PRAL-201ENST00000624952 3286 ntBASIC23.28■■□□□ 1.32
IFT140Q96RY7 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
IFT140Q96RY7 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC23.28■■□□□ 1.32
IFT140Q96RY7 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC23.28■■□□□ 1.32
IFT140Q96RY7 TTN-AS1-264ENST00000627564 1319 ntTSL 5 BASIC23.28■■□□□ 1.32
IFT140Q96RY7 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC23.28■■□□□ 1.32
IFT140Q96RY7 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC23.28■■□□□ 1.32
IFT140Q96RY7 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
IFT140Q96RY7 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC23.28■■□□□ 1.32
IFT140Q96RY7 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
IFT140Q96RY7 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC23.28■■□□□ 1.32
IFT140Q96RY7 PMM1-201ENST00000216259 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
IFT140Q96RY7 TUBB2BP1-201ENST00000404155 871 ntBASIC23.28■■□□□ 1.32
IFT140Q96RY7 CD37-203ENST00000426897 1204 ntTSL 2 BASIC23.28■■□□□ 1.32
IFT140Q96RY7 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
IFT140Q96RY7 AC007610.1-201ENST00000568130 498 ntTSL 3 BASIC23.28■■□□□ 1.32
IFT140Q96RY7 AC021321.1-201ENST00000607397 1113 ntBASIC23.28■■□□□ 1.32
IFT140Q96RY7 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC23.28■■□□□ 1.32
IFT140Q96RY7 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
IFT140Q96RY7 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
IFT140Q96RY7 AC232323.1-201ENST00000540724 2099 ntBASIC23.27■■□□□ 1.32
IFT140Q96RY7 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
IFT140Q96RY7 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC23.27■■□□□ 1.32
IFT140Q96RY7 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
IFT140Q96RY7 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC23.27■■□□□ 1.32
IFT140Q96RY7 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
IFT140Q96RY7 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC23.27■■□□□ 1.32
IFT140Q96RY7 AC011270.2-201ENST00000624293 2550 ntBASIC23.27■■□□□ 1.32
IFT140Q96RY7 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
IFT140Q96RY7 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC23.27■■□□□ 1.32
IFT140Q96RY7 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC23.27■■□□□ 1.32
IFT140Q96RY7 NANOS3-201ENST00000339133 581 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
IFT140Q96RY7 MIR1226-201ENST00000408658 75 ntBASIC23.27■■□□□ 1.32
IFT140Q96RY7 AKT3-IT1-201ENST00000417120 517 ntTSL 5 BASIC23.27■■□□□ 1.32
IFT140Q96RY7 AC013436.1-201ENST00000425077 422 ntTSL 3 BASIC23.27■■□□□ 1.32
IFT140Q96RY7 AL359182.1-201ENST00000435915 469 ntTSL 3 BASIC23.27■■□□□ 1.32
IFT140Q96RY7 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
IFT140Q96RY7 TMA16-204ENST00000508268 608 ntTSL 2 BASIC23.27■■□□□ 1.32
IFT140Q96RY7 CD44-224ENST00000526669 870 ntTSL 5 BASIC23.27■■□□□ 1.32
IFT140Q96RY7 CYP1B1-AS1-204ENST00000589303 579 ntTSL 5 BASIC23.27■■□□□ 1.32
IFT140Q96RY7 ZNF850-201ENST00000589390 523 ntTSL 3 BASIC23.27■■□□□ 1.32
IFT140Q96RY7 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
IFT140Q96RY7 ERAS-202ENST00000636362 826 ntAPPRIS P1 TSL 3 BASIC23.27■■□□□ 1.32
IFT140Q96RY7 NR1I2-206ENST00000638727 1194 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
IFT140Q96RY7 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC23.27■■□□□ 1.32
IFT140Q96RY7 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
IFT140Q96RY7 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
IFT140Q96RY7 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
IFT140Q96RY7 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC23.27■■□□□ 1.31
IFT140Q96RY7 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC23.26■■□□□ 1.31
IFT140Q96RY7 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
IFT140Q96RY7 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC23.26■■□□□ 1.31
IFT140Q96RY7 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
IFT140Q96RY7 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
IFT140Q96RY7 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
IFT140Q96RY7 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC23.26■■□□□ 1.31
IFT140Q96RY7 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
IFT140Q96RY7 SUMO1-206ENST00000409368 1187 ntTSL 4 BASIC23.26■■□□□ 1.31
IFT140Q96RY7 AC093495.1-201ENST00000420253 1067 ntTSL 4 BASIC23.26■■□□□ 1.31
IFT140Q96RY7 AL359458.1-201ENST00000430821 400 ntTSL 3 BASIC23.26■■□□□ 1.31
IFT140Q96RY7 HLA-W-207ENST00000439514 771 ntBASIC23.26■■□□□ 1.31
IFT140Q96RY7 BX072579.1-201ENST00000449453 344 ntTSL 3 BASIC23.26■■□□□ 1.31
IFT140Q96RY7 OR4A49P-201ENST00000527050 632 ntBASIC23.26■■□□□ 1.31
IFT140Q96RY7 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC23.26■■□□□ 1.31
IFT140Q96RY7 DLX6-203ENST00000555308 666 ntAPPRIS ALT2 TSL 2 BASIC23.26■■□□□ 1.31
IFT140Q96RY7 CDC37P2-201ENST00000562287 1029 ntBASIC23.26■■□□□ 1.31
IFT140Q96RY7 ECSIT-211ENST00000592312 1286 ntTSL 5 BASIC23.26■■□□□ 1.31
IFT140Q96RY7 AC138627.1-201ENST00000641127 1257 ntBASIC23.26■■□□□ 1.31
IFT140Q96RY7 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
IFT140Q96RY7 EDEM2-201ENST00000374491 1756 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
IFT140Q96RY7 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
IFT140Q96RY7 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms